(35 nodes) Mixed, incl. Threonine catabolism, and TP53 Regulates Transcription of Cell Cycle Genes network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10395	Uncharacterized protein. (134 aa)
	PV08_07485	Uncharacterized protein. (1689 aa)
	PV08_06212	Uncharacterized protein. (425 aa)
	PV08_04121	Uncharacterized protein. (459 aa)
	PV08_00436	CUE domain-containing protein. (198 aa)
	PV08_11768	M20_dimer domain-containing protein. (518 aa)
	PV08_10652	PALP domain-containing protein. (373 aa)
	PV08_09654	NmrA domain-containing protein. (325 aa)
	PV08_08515	Uncharacterized protein. (135 aa)
	PV08_06063	M20_dimer domain-containing protein. (430 aa)
	PV08_03982	Endo/exonuclease/phosphatase domain-containing protein. (687 aa)
	PV08_04127	Homoserine O-acetyltransferase. (529 aa)
	PV08_02810	Sulf_transp domain-containing protein. (324 aa)
	PV08_03606	Uncharacterized protein. (116 aa)
	PV08_02137	Zn(2)-C6 fungal-type domain-containing protein. (183 aa)
	PV08_11437	Uncharacterized protein. (2310 aa)
	PV08_11602	Uncharacterized protein. (129 aa)
	PV08_09377	Uncharacterized protein. (130 aa)
	PV08_09655	Zn(2)-C6 fungal-type domain-containing protein. (743 aa)
	PV08_09410	NOT2_3_5 domain-containing protein. (466 aa)
	PV08_08272	Uncharacterized protein. (396 aa)
	PV08_06608	Uncharacterized protein. (137 aa)
	PV08_05193	Uncharacterized protein. (467 aa)
	PV08_05436	Uncharacterized protein. (125 aa)
	PV08_05481	Uncharacterized protein. (115 aa)
	PV08_05985	M20_dimer domain-containing protein. (465 aa)
	PV08_03973	Uncharacterized protein. (431 aa)
	PV08_03738	Uncharacterized protein. (128 aa)
	PV08_02701	Uncharacterized protein. (678 aa)
	PV08_10714	Uncharacterized protein. (629 aa)
	PV08_01418	CN hydrolase domain-containing protein. (286 aa)
	PV08_01469	Uncharacterized protein. (449 aa)
	PV08_04089	Uncharacterized protein. (128 aa)
	PV08_02391	WW domain-containing protein. (308 aa)
	PV08_01834	Uncharacterized protein. (447 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00436	PV08_02391	A0A0D1YX38	A0A0D2C3C0	CUE domain-containing protein.	WW domain-containing protein.	0.926
PV08_00436	PV08_03982	A0A0D1YX38	A0A0D1ZVP7	CUE domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.963
PV08_00436	PV08_04121	A0A0D1YX38	A0A0D1YP52	CUE domain-containing protein.	Uncharacterized protein.	0.968
PV08_00436	PV08_07485	A0A0D1YX38	A0A0D1YID8	CUE domain-containing protein.	Uncharacterized protein.	0.958
PV08_00436	PV08_08272	A0A0D1YX38	A0A0D2B3A1	CUE domain-containing protein.	Uncharacterized protein.	0.968
PV08_00436	PV08_10714	A0A0D1YX38	A0A0D2BJ96	CUE domain-containing protein.	Uncharacterized protein.	0.969
PV08_00436	PV08_11437	A0A0D1YX38	A0A0D2AUR9	CUE domain-containing protein.	Uncharacterized protein.	0.933
PV08_01469	PV08_07485	A0A0D2BR12	A0A0D1YID8	Uncharacterized protein.	Uncharacterized protein.	0.434
PV08_01469	PV08_08272	A0A0D2BR12	A0A0D2B3A1	Uncharacterized protein.	Uncharacterized protein.	0.435
PV08_01469	PV08_10652	A0A0D2BR12	A0A0D1ZEC4	Uncharacterized protein.	PALP domain-containing protein.	0.536
PV08_02137	PV08_07485	A0A0D2A9Y9	A0A0D1YID8	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.434
PV08_02137	PV08_08272	A0A0D2A9Y9	A0A0D2B3A1	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.435
PV08_02137	PV08_10652	A0A0D2A9Y9	A0A0D1ZEC4	Zn(2)-C6 fungal-type domain-containing protein.	PALP domain-containing protein.	0.536
PV08_02391	PV08_00436	A0A0D2C3C0	A0A0D1YX38	WW domain-containing protein.	CUE domain-containing protein.	0.926
PV08_02391	PV08_03982	A0A0D2C3C0	A0A0D1ZVP7	WW domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.968
PV08_02391	PV08_04121	A0A0D2C3C0	A0A0D1YP52	WW domain-containing protein.	Uncharacterized protein.	0.968
PV08_02391	PV08_07485	A0A0D2C3C0	A0A0D1YID8	WW domain-containing protein.	Uncharacterized protein.	0.966
PV08_02391	PV08_08272	A0A0D2C3C0	A0A0D2B3A1	WW domain-containing protein.	Uncharacterized protein.	0.969
PV08_02391	PV08_09410	A0A0D2C3C0	A0A0D2B0A7	WW domain-containing protein.	NOT2_3_5 domain-containing protein.	0.926
PV08_02391	PV08_10714	A0A0D2C3C0	A0A0D2BJ96	WW domain-containing protein.	Uncharacterized protein.	0.969