(11 nodes) Regulation of TOR signaling network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_08358	DEP domain-containing protein. (1891 aa)
	PV08_08729	Uncharacterized protein. (314 aa)
	PV08_07194	Uncharacterized protein. (172 aa)
	PV08_03180	Uncharacterized protein. (414 aa)
	PV08_03351	WD_REPEATS_REGION domain-containing protein. (1350 aa)
	PV08_10306	UDENN FLCN/SMCR8-type domain-containing protein. (516 aa)
	PV08_08205	Uncharacterized protein. (746 aa)
	PV08_03932	WD_REPEATS_REGION domain-containing protein. (1541 aa)
	PV08_10398	Uncharacterized protein. (500 aa)
	PV08_05289	Zinc_ribbon_16 domain-containing protein. (1082 aa)
	PV08_01744	Mitochondrial inner membrane protease subunit. (165 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_01744	PV08_03180	A0A0D2CCE1	A0A0D1YUF8	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.638
PV08_01744	PV08_03351	A0A0D2CCE1	A0A0D1YUX7	Mitochondrial inner membrane protease subunit.	WD_REPEATS_REGION domain-containing protein.	0.961
PV08_01744	PV08_03932	A0A0D2CCE1	A0A0D2BCN8	Mitochondrial inner membrane protease subunit.	WD_REPEATS_REGION domain-containing protein.	0.961
PV08_01744	PV08_05289	A0A0D2CCE1	A0A0D2BVE4	Mitochondrial inner membrane protease subunit.	Zinc_ribbon_16 domain-containing protein.	0.721
PV08_01744	PV08_08205	A0A0D2CCE1	A0A0D2B2C2	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.746
PV08_01744	PV08_08358	A0A0D2CCE1	A0A0D1YDQ5	Mitochondrial inner membrane protease subunit.	DEP domain-containing protein.	0.960
PV08_01744	PV08_08729	A0A0D2CCE1	A0A0D1YER5	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.637
PV08_01744	PV08_10398	A0A0D2CCE1	A0A0D2BIB6	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.968
PV08_03180	PV08_01744	A0A0D1YUF8	A0A0D2CCE1	Uncharacterized protein.	Mitochondrial inner membrane protease subunit.	0.638
PV08_03180	PV08_03351	A0A0D1YUF8	A0A0D1YUX7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.975
PV08_03180	PV08_03932	A0A0D1YUF8	A0A0D2BCN8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.781
PV08_03180	PV08_05289	A0A0D1YUF8	A0A0D2BVE4	Uncharacterized protein.	Zinc_ribbon_16 domain-containing protein.	0.971
PV08_03180	PV08_07194	A0A0D1YUF8	A0A0D1YHL3	Uncharacterized protein.	Uncharacterized protein.	0.937
PV08_03180	PV08_08205	A0A0D1YUF8	A0A0D2B2C2	Uncharacterized protein.	Uncharacterized protein.	0.975
PV08_03180	PV08_08358	A0A0D1YUF8	A0A0D1YDQ5	Uncharacterized protein.	DEP domain-containing protein.	0.974
PV08_03180	PV08_08729	A0A0D1YUF8	A0A0D1YER5	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_03180	PV08_10306	A0A0D1YUF8	A0A0D1ZDI3	Uncharacterized protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.975
PV08_03180	PV08_10398	A0A0D1YUF8	A0A0D2BIB6	Uncharacterized protein.	Uncharacterized protein.	0.960
PV08_03351	PV08_01744	A0A0D1YUX7	A0A0D2CCE1	WD_REPEATS_REGION domain-containing protein.	Mitochondrial inner membrane protease subunit.	0.961
PV08_03351	PV08_03180	A0A0D1YUX7	A0A0D1YUF8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.975