32 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10280	PCI domain-containing protein. (487 aa)
	PV08_08807	F-box domain-containing protein. (525 aa)
	PV08_05397	WD_REPEATS_REGION domain-containing protein. (705 aa)
	PV08_05644	F-box domain-containing protein. (553 aa)
	PV08_00701	PCI domain-containing protein. (420 aa)
	PV08_01565	Uncharacterized protein. (669 aa)
	PV08_01585	TIP120 domain-containing protein. (1338 aa)
	PV08_01625	CULLIN_2 domain-containing protein; Belongs to the cullin family. (896 aa)
	PV08_06627	Uncharacterized protein. (1133 aa)
	PV08_06531	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	PV08_03815	RING-box protein 1. (125 aa)
	PV08_05002	WD_REPEATS_REGION domain-containing protein. (508 aa)
	PV08_02334	Uncharacterized protein. (253 aa)
	PV08_02595	Uncharacterized protein. (630 aa)
	PV08_02142	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (320 aa)
	PV08_10129	CULLIN_2 domain-containing protein; Belongs to the cullin family. (823 aa)
	PV08_10745	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (137 aa)
	PV08_09077	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme. (531 aa)
	PV08_08025	CPSF_A domain-containing protein. (1205 aa)
	PV08_08190	COP9 signalosome complex subunit 2. (505 aa)
	PV08_08440	F-box domain-containing protein. (959 aa)
	PV08_07563	Uncharacterized protein. (1082 aa)
	PV08_07820	PCI domain-containing protein. (312 aa)
	PV08_05340	Uncharacterized protein. (712 aa)
	PV08_04550	MPN domain-containing protein. (416 aa)
	PV08_01040	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family. (163 aa)
	PV08_01830	MPN domain-containing protein. (371 aa)
	PV08_07669	Uncharacterized protein. (1398 aa)
	PV08_06009	Uncharacterized protein. (679 aa)
	PV08_00031	Uncharacterized protein. (867 aa)
	PV08_00549	PCI domain-containing protein. (479 aa)
	PV08_00669	E2_bind domain-containing protein. (436 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00031	PV08_00549	A0A0D2C7C8	A0A0D2C8V9	Uncharacterized protein.	PCI domain-containing protein.	0.949
PV08_00031	PV08_00669	A0A0D2C7C8	A0A0D2C961	Uncharacterized protein.	E2_bind domain-containing protein.	0.676
PV08_00031	PV08_00701	A0A0D2C7C8	A0A0D1YXX0	Uncharacterized protein.	PCI domain-containing protein.	0.963
PV08_00031	PV08_01040	A0A0D2C7C8	A0A0D2BPL1	Uncharacterized protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.821
PV08_00031	PV08_01565	A0A0D2C7C8	A0A0D1Z0A5	Uncharacterized protein.	Uncharacterized protein.	0.766
PV08_00031	PV08_01585	A0A0D2C7C8	A0A0D1Z0D2	Uncharacterized protein.	TIP120 domain-containing protein.	0.411
PV08_00031	PV08_01625	A0A0D2C7C8	A0A0D1Z0F0	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.890
PV08_00031	PV08_02142	A0A0D2C7C8	A0A0D2A9Z2	Uncharacterized protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.770
PV08_00031	PV08_02334	A0A0D2C7C8	A0A0D1ZZE8	Uncharacterized protein.	Uncharacterized protein.	0.821
PV08_00031	PV08_02595	A0A0D2C7C8	A0A0D1ZZZ7	Uncharacterized protein.	Uncharacterized protein.	0.728
PV08_00031	PV08_03815	A0A0D2C7C8	A0A0D1ZV76	Uncharacterized protein.	RING-box protein 1.	0.878
PV08_00031	PV08_04550	A0A0D2C7C8	A0A0D2BED6	Uncharacterized protein.	MPN domain-containing protein.	0.959
PV08_00031	PV08_05002	A0A0D2C7C8	A0A0D1ZYR2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.801
PV08_00031	PV08_05644	A0A0D2C7C8	A0A0D1YKR9	Uncharacterized protein.	F-box domain-containing protein.	0.457
PV08_00031	PV08_06009	A0A0D2C7C8	A0A0D2BXF3	Uncharacterized protein.	Uncharacterized protein.	0.454
PV08_00031	PV08_06531	A0A0D2C7C8	A0A0D1ZUR1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.828
PV08_00031	PV08_06627	A0A0D2C7C8	A0A0D1ZLX7	Uncharacterized protein.	Uncharacterized protein.	0.697
PV08_00031	PV08_07563	A0A0D2C7C8	A0A0D2B766	Uncharacterized protein.	Uncharacterized protein.	0.454
PV08_00031	PV08_07669	A0A0D2C7C8	A0A0D2BUE2	Uncharacterized protein.	Uncharacterized protein.	0.478
PV08_00031	PV08_07820	A0A0D2C7C8	A0A0D2B839	Uncharacterized protein.	PCI domain-containing protein.	0.934