(12 nodes) Mixed, incl. HSF1-dependent transactivation, and Thiaminase-2/PQQC network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_09457	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
	PV08_08318	PAC domain-containing protein. (984 aa)
	PV08_01076	Uncharacterized protein. (262 aa)
	PV08_01334	Uncharacterized protein. (1269 aa)
	PV08_02891	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (467 aa)
	PV08_03636	Protein kinase domain-containing protein. (636 aa)
	PV08_07608	Uncharacterized protein. (433 aa)
	PV08_10118	Protein kinase domain-containing protein. (266 aa)
	PV08_01075	Uncharacterized protein; Belongs to the protein kinase superfamily. (476 aa)
	PV08_07564	HORMA domain-containing protein. (440 aa)
	PV08_06265	Uncharacterized protein. (619 aa)
	PV08_04804	TENA_THI-4 domain-containing protein. (278 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_01075	PV08_01334	A0A0D2BPS9	A0A0D1YZK7	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.409
PV08_01075	PV08_02891	A0A0D2BPS9	A0A0D2A0V8	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.723
PV08_01075	PV08_03636	A0A0D2BPS9	A0A0D2A353	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.548
PV08_01075	PV08_07564	A0A0D2BPS9	A0A0D2BU17	Uncharacterized protein; Belongs to the protein kinase superfamily.	HORMA domain-containing protein.	0.811
PV08_01075	PV08_10118	A0A0D2BPS9	A0A0D2BHH8	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.443
PV08_01076	PV08_01334	A0A0D1YZ27	A0A0D1YZK7	Uncharacterized protein.	Uncharacterized protein.	0.409
PV08_01076	PV08_02891	A0A0D1YZ27	A0A0D2A0V8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.682
PV08_01076	PV08_07564	A0A0D1YZ27	A0A0D2BU17	Uncharacterized protein.	HORMA domain-containing protein.	0.811
PV08_01334	PV08_01075	A0A0D1YZK7	A0A0D2BPS9	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.409
PV08_01334	PV08_01076	A0A0D1YZK7	A0A0D1YZ27	Uncharacterized protein.	Uncharacterized protein.	0.409
PV08_01334	PV08_03636	A0A0D1YZK7	A0A0D2A353	Uncharacterized protein.	Protein kinase domain-containing protein.	0.409
PV08_01334	PV08_06265	A0A0D1YZK7	A0A0D2BY29	Uncharacterized protein.	Uncharacterized protein.	0.409
PV08_01334	PV08_08318	A0A0D1YZK7	A0A0D1YDN5	Uncharacterized protein.	PAC domain-containing protein.	0.409
PV08_01334	PV08_09457	A0A0D1YZK7	A0A0D1YB78	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.409
PV08_02891	PV08_01075	A0A0D2A0V8	A0A0D2BPS9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.723
PV08_02891	PV08_01076	A0A0D2A0V8	A0A0D1YZ27	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.682
PV08_02891	PV08_03636	A0A0D2A0V8	A0A0D2A353	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.791
PV08_02891	PV08_06265	A0A0D2A0V8	A0A0D2BY29	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.419
PV08_02891	PV08_08318	A0A0D2A0V8	A0A0D1YDN5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PAC domain-containing protein.	0.419
PV08_02891	PV08_09457	A0A0D2A0V8	A0A0D1YB78	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.738