21 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_04016	Uncharacterized protein. (548 aa)
	PV08_11753	Uncharacterized protein. (853 aa)
	PV08_11536	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (112 aa)
	PV08_06178	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	PV08_06444	DUF2236 domain-containing protein. (475 aa)
	PV08_04681	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. (1278 aa)
	PV08_11537	Histone H3; Belongs to the histone H3 family. (136 aa)
	PV08_10214	Histone H2B; Belongs to the histone H2B family. (141 aa)
	PV08_09267	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones. (538 aa)
	PV08_09372	Histone H2A; Belongs to the histone H2A family. (138 aa)
	PV08_06049	Uncharacterized protein. (840 aa)
	PV08_05740	WD_REPEATS_REGION domain-containing protein. (519 aa)
	PV08_10213	Histone H2A; Belongs to the histone H2A family. (132 aa)
	PV08_03303	WD_REPEATS_REGION domain-containing protein. (476 aa)
	PV08_00655	BAH domain-containing protein. (437 aa)
	PV08_01723	Uncharacterized protein. (1512 aa)
	PV08_04084	DUF2236 domain-containing protein. (499 aa)
	PV08_04516	Histone H3-like centromeric protein cnp1. (151 aa)
	PV08_03178	Uncharacterized protein. (603 aa)
	PV08_00664	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (965 aa)
	PV08_02114	WD_REPEATS_REGION domain-containing protein. (185 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00655	PV08_00664	A0A0D2BNH4	A0A0D2C958	BAH domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.627
PV08_00655	PV08_03178	A0A0D2BNH4	A0A0D2C5Q1	BAH domain-containing protein.	Uncharacterized protein.	0.675
PV08_00655	PV08_03303	A0A0D2BNH4	A0A0D2BJF3	BAH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.804
PV08_00655	PV08_04016	A0A0D2BNH4	A0A0D1YNW9	BAH domain-containing protein.	Uncharacterized protein.	0.813
PV08_00655	PV08_04084	A0A0D2BNH4	A0A0D2BZW6	BAH domain-containing protein.	DUF2236 domain-containing protein.	0.991
PV08_00655	PV08_04516	A0A0D2BNH4	A0A0D2C0W4	BAH domain-containing protein.	Histone H3-like centromeric protein cnp1.	0.991
PV08_00655	PV08_04681	A0A0D2BNH4	A0A0D1ZXY9	BAH domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.736
PV08_00655	PV08_06178	A0A0D2BNH4	A0A0D1ZTM6	BAH domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.602
PV08_00655	PV08_06444	A0A0D2BNH4	A0A0D1ZUD2	BAH domain-containing protein.	DUF2236 domain-containing protein.	0.991
PV08_00655	PV08_09372	A0A0D2BNH4	A0A0D2AZH4	BAH domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.553
PV08_00655	PV08_10213	A0A0D2BNH4	A0A0D2BHR1	BAH domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.549
PV08_00655	PV08_10214	A0A0D2BNH4	A0A0D2AWU6	BAH domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.590
PV08_00655	PV08_11536	A0A0D2BNH4	A0A0D1ZC45	BAH domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.549
PV08_00655	PV08_11537	A0A0D2BNH4	A0A0D2AV46	BAH domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.991
PV08_00655	PV08_11753	A0A0D2BNH4	A0A0D1ZAG2	BAH domain-containing protein.	Uncharacterized protein.	0.736
PV08_00664	PV08_00655	A0A0D2C958	A0A0D2BNH4	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	BAH domain-containing protein.	0.627
PV08_00664	PV08_01723	A0A0D2C958	A0A0D2BQB6	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	Uncharacterized protein.	0.725
PV08_00664	PV08_02114	A0A0D2C958	A0A0D2CDE7	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.452
PV08_00664	PV08_03178	A0A0D2C958	A0A0D2C5Q1	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	Uncharacterized protein.	0.836
PV08_00664	PV08_03303	A0A0D2C958	A0A0D2BJF3	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.815