(25 nodes) Fatty acid beta-oxidation, and Leucine catabolic process network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_09406	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (292 aa)
	PV08_08353	Uncharacterized protein. (350 aa)
	PV08_06982	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (422 aa)
	PV08_06357	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (703 aa)
	PV08_03769	Uncharacterized protein. (727 aa)
	PV08_04412	Uncharacterized protein. (432 aa)
	PV08_11646	Uncharacterized protein. (306 aa)
	PV08_10858	Uncharacterized protein. (318 aa)
	PV08_07928	Uncharacterized protein. (313 aa)
	PV08_06328	Uncharacterized protein. (540 aa)
	PV08_01007	Uncharacterized protein. (425 aa)
	PV08_10884	Uncharacterized protein. (392 aa)
	PV08_08661	Zn(2)-C6 fungal-type domain-containing protein. (649 aa)
	PV08_07279	Uncharacterized protein. (287 aa)
	PV08_07717	Uncharacterized protein. (445 aa)
	PV08_06331	Uncharacterized protein. (794 aa)
	PV08_04045	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (518 aa)
	PV08_04166	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	PV08_11306	Uncharacterized protein. (573 aa)
	PV08_03377	Uncharacterized protein. (636 aa)
	PV08_00037	Uncharacterized protein. (400 aa)
	PV08_01035	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (412 aa)
	PV08_01800	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (297 aa)
	PV08_06085	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (425 aa)
	PV08_03767	Uncharacterized protein. (566 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00037	PV08_01007	A0A0D2BLM7	A0A0D2A6P2	Uncharacterized protein.	Uncharacterized protein.	0.762
PV08_00037	PV08_01035	A0A0D2BLM7	A0A0D2BPK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.841
PV08_00037	PV08_01800	A0A0D2BLM7	A0A0D2BS16	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.826
PV08_00037	PV08_03377	A0A0D2BLM7	A0A0D2BKJ4	Uncharacterized protein.	Uncharacterized protein.	0.634
PV08_00037	PV08_03767	A0A0D2BLM7	A0A0D2BZ51	Uncharacterized protein.	Uncharacterized protein.	0.840
PV08_00037	PV08_03769	A0A0D2BLM7	A0A0D1YND8	Uncharacterized protein.	Uncharacterized protein.	0.853
PV08_00037	PV08_04045	A0A0D2BLM7	A0A0D2BE34	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.831
PV08_00037	PV08_04166	A0A0D2BLM7	A0A0D2BEH1	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.793
PV08_00037	PV08_04412	A0A0D2BLM7	A0A0D1YPS5	Uncharacterized protein.	Uncharacterized protein.	0.756
PV08_00037	PV08_06085	A0A0D2BLM7	A0A0D2BXQ7	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.682
PV08_00037	PV08_06328	A0A0D2BLM7	A0A0D1ZU00	Uncharacterized protein.	Uncharacterized protein.	0.713
PV08_00037	PV08_06331	A0A0D2BLM7	A0A0D2BCC8	Uncharacterized protein.	Uncharacterized protein.	0.736
PV08_00037	PV08_06357	A0A0D2BLM7	A0A0D1YMN3	Uncharacterized protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.620
PV08_00037	PV08_06982	A0A0D2BLM7	A0A0D1YGS8	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.831
PV08_00037	PV08_07279	A0A0D2BLM7	A0A0D2B750	Uncharacterized protein.	Uncharacterized protein.	0.634
PV08_00037	PV08_07717	A0A0D2BLM7	A0A0D2B8D9	Uncharacterized protein.	Uncharacterized protein.	0.655
PV08_00037	PV08_07928	A0A0D2BLM7	A0A0D1ZIR0	Uncharacterized protein.	Uncharacterized protein.	0.603
PV08_00037	PV08_08353	A0A0D2BLM7	A0A0D1YDQ3	Uncharacterized protein.	Uncharacterized protein.	0.603
PV08_00037	PV08_08661	A0A0D2BLM7	A0A0D2B3L7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.634
PV08_00037	PV08_09406	A0A0D2BLM7	A0A0D1YB40	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.859