6 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_03418	Uncharacterized protein. (292 aa)
	PV08_00676	TPR_REGION domain-containing protein. (644 aa)
	PV08_05498	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (457 aa)
	PV08_02738	Pex14_N domain-containing protein. (394 aa)
	PV08_01853	SH3 domain-containing protein. (475 aa)
	PV08_02662	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (459 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00676	PV08_01853	A0A0D1YXV2	A0A0D2BQK7	TPR_REGION domain-containing protein.	SH3 domain-containing protein.	0.986
PV08_00676	PV08_02662	A0A0D1YXV2	A0A0D2C419	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
PV08_00676	PV08_02738	A0A0D1YXV2	A0A0D2BIQ2	TPR_REGION domain-containing protein.	Pex14_N domain-containing protein.	0.993
PV08_00676	PV08_03418	A0A0D1YXV2	A0A0D1YV20	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.988
PV08_00676	PV08_05498	A0A0D1YXV2	A0A0D1ZRR1	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
PV08_01853	PV08_00676	A0A0D2BQK7	A0A0D1YXV2	SH3 domain-containing protein.	TPR_REGION domain-containing protein.	0.986
PV08_01853	PV08_02662	A0A0D2BQK7	A0A0D2C419	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.986
PV08_01853	PV08_02738	A0A0D2BQK7	A0A0D2BIQ2	SH3 domain-containing protein.	Pex14_N domain-containing protein.	0.999
PV08_01853	PV08_03418	A0A0D2BQK7	A0A0D1YV20	SH3 domain-containing protein.	Uncharacterized protein.	0.983
PV08_01853	PV08_05498	A0A0D2BQK7	A0A0D1ZRR1	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.986
PV08_02662	PV08_00676	A0A0D2C419	A0A0D1YXV2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	TPR_REGION domain-containing protein.	0.999
PV08_02662	PV08_01853	A0A0D2C419	A0A0D2BQK7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SH3 domain-containing protein.	0.986
PV08_02662	PV08_02738	A0A0D2C419	A0A0D2BIQ2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Pex14_N domain-containing protein.	0.985
PV08_02662	PV08_03418	A0A0D2C419	A0A0D1YV20	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.997
PV08_02662	PV08_05498	A0A0D2C419	A0A0D1ZRR1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.954
PV08_02738	PV08_00676	A0A0D2BIQ2	A0A0D1YXV2	Pex14_N domain-containing protein.	TPR_REGION domain-containing protein.	0.993
PV08_02738	PV08_01853	A0A0D2BIQ2	A0A0D2BQK7	Pex14_N domain-containing protein.	SH3 domain-containing protein.	0.999
PV08_02738	PV08_02662	A0A0D2BIQ2	A0A0D2C419	Pex14_N domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.985
PV08_02738	PV08_03418	A0A0D2BIQ2	A0A0D1YV20	Pex14_N domain-containing protein.	Uncharacterized protein.	0.983
PV08_02738	PV08_05498	A0A0D2BIQ2	A0A0D1ZRR1	Pex14_N domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.985