(10 nodes) Degradation of GABA, and Pyridoxal phosphate-dependent decarboxylase network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10436	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (521 aa)
	PV08_02299	Aldedh domain-containing protein. (498 aa)
	PV08_03429	Succinate-semialdehyde dehydrogenase. (503 aa)
	PV08_09760	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (516 aa)
	PV08_08536	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (503 aa)
	PV08_06144	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (466 aa)
	PV08_06036	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (461 aa)
	PV08_11336	Uncharacterized protein. (486 aa)
	PV08_00309	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (493 aa)
	PV08_03777	4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (433 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00309	PV08_02299	A0A0D2BMA9	A0A0D1ZZC8	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein.	0.492
PV08_00309	PV08_03777	A0A0D2BMA9	A0A0D2BZ61	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.628
PV08_00309	PV08_06036	A0A0D2BMA9	A0A0D2BBM2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.703
PV08_00309	PV08_06144	A0A0D2BMA9	A0A0D2BAV1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.578
PV08_00309	PV08_08536	A0A0D2BMA9	A0A0D2B342	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.577
PV08_00309	PV08_09760	A0A0D2BMA9	A0A0D2B0P7	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.786
PV08_00309	PV08_10436	A0A0D2BMA9	A0A0D1Y841	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.617
PV08_02299	PV08_00309	A0A0D1ZZC8	A0A0D2BMA9	Aldedh domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.492
PV08_02299	PV08_03429	A0A0D1ZZC8	A0A0D2A2H1	Aldedh domain-containing protein.	Succinate-semialdehyde dehydrogenase.	0.493
PV08_02299	PV08_03777	A0A0D1ZZC8	A0A0D2BZ61	Aldedh domain-containing protein.	4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.715
PV08_02299	PV08_06036	A0A0D1ZZC8	A0A0D2BBM2	Aldedh domain-containing protein.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.735
PV08_02299	PV08_06144	A0A0D1ZZC8	A0A0D2BAV1	Aldedh domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.480
PV08_02299	PV08_08536	A0A0D1ZZC8	A0A0D2B342	Aldedh domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.497
PV08_02299	PV08_09760	A0A0D1ZZC8	A0A0D2B0P7	Aldedh domain-containing protein.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.775
PV08_02299	PV08_10436	A0A0D1ZZC8	A0A0D1Y841	Aldedh domain-containing protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.511
PV08_03429	PV08_02299	A0A0D2A2H1	A0A0D1ZZC8	Succinate-semialdehyde dehydrogenase.	Aldedh domain-containing protein.	0.493
PV08_03429	PV08_03777	A0A0D2A2H1	A0A0D2BZ61	Succinate-semialdehyde dehydrogenase.	4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.628
PV08_03429	PV08_06036	A0A0D2A2H1	A0A0D2BBM2	Succinate-semialdehyde dehydrogenase.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.703
PV08_03429	PV08_06144	A0A0D2A2H1	A0A0D2BAV1	Succinate-semialdehyde dehydrogenase.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.578
PV08_03429	PV08_08536	A0A0D2A2H1	A0A0D2B342	Succinate-semialdehyde dehydrogenase.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.573