STRINGSTRING
PV08_11782 PV08_11782 PV08_09517 PV08_09517 PV08_09537 PV08_09537 PV08_06657 PV08_06657 PV08_07118 PV08_07118 PV08_07365 PV08_07365 PV08_07425 PV08_07425 PV08_07878 PV08_07878 PV08_05477 PV08_05477 PV08_06307 PV08_06307 PV08_06556 PV08_06556 PV08_03935 PV08_03935 PV08_04136 PV08_04136 PV08_04467 PV08_04467 PV08_04670 PV08_04670 PV08_04821 PV08_04821 PV08_04861 PV08_04861 PV08_04926 PV08_04926 PV08_02348 PV08_02348 PV08_02368 PV08_02368 PV08_03155 PV08_03155 PV08_03275 PV08_03275 PV08_00536 PV08_00536 PV08_00741 PV08_00741 PV08_01615 PV08_01615 PV08_01901 PV08_01901 PV08_11380 PV08_11380 PV08_10838 PV08_10838 PV08_09165 PV08_09165 PV08_08244 PV08_08244 PV08_06893 PV08_06893 PV08_05757 PV08_05757 PV08_06038 PV08_06038 PV08_06043 PV08_06043 PV08_06133 PV08_06133 PV08_04037 PV08_04037 PV08_04238 PV08_04238 PV08_04388 PV08_04388 PV08_04666 PV08_04666 PV08_04787 PV08_04787 PV08_04977 PV08_04977 NOP7 NOP7 PV08_02795 PV08_02795 PV08_00617 PV08_00617 PV08_00787 PV08_00787 PV08_00857 PV08_00857 PV08_01405 PV08_01405 PV08_01435 PV08_01435 PV08_02097 PV08_02097 PV08_11366 PV08_11366 PV08_11422 PV08_11422 PV08_11404 PV08_11404 PV08_10262 PV08_10262 PV08_10119 PV08_10119 PV08_10124 PV08_10124 PV08_10768 PV08_10768 PV08_10864 PV08_10864 PV08_09050 PV08_09050 PV08_11002 PV08_11002 PV08_09088 PV08_09088 PV08_09342 PV08_09342 PV08_09454 PV08_09454 PV08_09459 PV08_09459 PV08_09264 PV08_09264 PV08_09595 PV08_09595 PV08_09906 PV08_09906 PV08_09931 PV08_09931 PV08_09817 PV08_09817 PV08_08466 PV08_08466 PV08_08591 PV08_08591 PV08_08317 PV08_08317 PV08_08573 PV08_08573 PV08_08859 PV08_08859 PV08_08869 PV08_08869 PV08_08733 PV08_08733 PV08_06744 PV08_06744 PV08_06741 PV08_06741 PV08_07317 PV08_07317 PV08_07362 PV08_07362 PV08_07785 PV08_07785 ERB1 ERB1 PV08_05240 PV08_05240 PV08_05658 PV08_05658 PV08_06111 PV08_06111 PV08_06256 PV08_06256 PV08_03828 PV08_03828 PV08_04284 PV08_04284 PV08_04474 PV08_04474 PV08_04510 PV08_04510 PV08_04110 PV08_04110 PV08_05063 PV08_05063 PV08_11346 PV08_11346 PV08_11351 PV08_11351 PV08_11367 PV08_11367 PV08_02481 PV08_02481 PV08_10734 PV08_10734 PV08_03084 PV08_03084 PV08_03139 PV08_03139 PV08_10850 PV08_10850 PV08_10941 PV08_10941 PV08_03280 PV08_03280 PV08_00334 PV08_00334 TIF6 TIF6 PV08_08171 PV08_08171 PV08_08236 PV08_08236 PV08_01652 PV08_01652 PV08_01257 PV08_01257 PV08_08617 PV08_08617 PV08_01973 PV08_01973 PV08_01559 PV08_01559 PV08_01564 PV08_01564 PV08_01815 PV08_01815 NAT10 NAT10 PV08_02135 PV08_02135 SPB1 SPB1 PV08_07273 PV08_07273 PV08_07318 PV08_07318 PV08_07766 PV08_07766 PV08_05490 PV08_05490 PV08_05647 PV08_05647 PV08_05657 PV08_05657 PV08_04094 PV08_04094 PV08_04506 PV08_04506 PV08_04814 PV08_04814 PV08_04904 PV08_04904 PV08_04914 PV08_04914 YTM1 YTM1 PV08_05034 PV08_05034 PV08_03133 PV08_03133 PV08_00719 PV08_00719 PV08_00754 PV08_00754 PV08_00879 PV08_00879
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV08_11782Uncharacterized protein. (381 aa)
PV08_09517WD_REPEATS_REGION domain-containing protein. (508 aa)
PV08_09537Uncharacterized protein. (355 aa)
PV08_06657CBF domain-containing protein. (287 aa)
PV08_07118NUC173 domain-containing protein. (1281 aa)
PV08_07365Uncharacterized protein. (818 aa)
PV08_07425Ribosome biogenesis protein nsa2. (261 aa)
PV08_07878WD_REPEATS_REGION domain-containing protein. (533 aa)
PV08_05477Uncharacterized protein. (277 aa)
PV08_06307Uncharacterized protein; Belongs to the DEAD box helicase family. (732 aa)
PV08_06556Uncharacterized protein; Belongs to the DEAD box helicase family. (529 aa)
PV08_03935Uncharacterized protein. (471 aa)
PV08_04136Uncharacterized protein. (900 aa)
PV08_04467Protein MAK16; Belongs to the MAK16 family. (327 aa)
PV08_04670WD_REPEATS_REGION domain-containing protein. (588 aa)
PV08_04821zf-LYAR domain-containing protein. (530 aa)
PV08_04861G-patch domain-containing protein. (313 aa)
PV08_04926Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (221 aa)
PV08_02348Uncharacterized protein. (272 aa)
PV08_02368Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (702 aa)
PV08_03155Uncharacterized protein. (296 aa)
PV08_03275Uncharacterized protein. (703 aa)
PV08_00536RRM domain-containing protein. (488 aa)
PV08_00741Uncharacterized protein. (299 aa)
PV08_01615Uncharacterized protein. (306 aa)
PV08_01901S4 RNA-binding domain-containing protein. (188 aa)
PV08_11380RNA helicase. (639 aa)
PV08_10838C2H2-type domain-containing protein. (113 aa)
PV08_09165RNA helicase. (878 aa)
PV08_08244TRASH domain-containing protein. (213 aa)
PV08_06893Uncharacterized protein. (938 aa)
PV08_05757Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4840 aa)
PV08_06038Methyltransf_25 domain-containing protein. (227 aa)
PV08_06043RRM domain-containing protein. (282 aa)
PV08_06133WD_REPEATS_REGION domain-containing protein. (1505 aa)
PV08_0403718S rRNA biogenesis protein RCL1. (406 aa)
PV08_04238WD_REPEATS_REGION domain-containing protein. (960 aa)
PV08_04388Uncharacterized protein. (1030 aa)
PV08_04666WD_REPEATS_REGION domain-containing protein. (963 aa)
PV08_04787Pre-rRNA-processing protein PNO1. (260 aa)
PV08_0497740S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (681 aa)
PV08_02795Uncharacterized protein; Belongs to the DEAD box helicase family. (612 aa)
PV08_00617Ribosomal RNA small subunit methyltransferase NEP1. (256 aa)
PV08_00787Brix domain-containing protein. (457 aa)
PV08_00857Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (659 aa)
PV08_01405WD_REPEATS_REGION domain-containing protein. (990 aa)
PV08_01435Uncharacterized protein. (485 aa)
PV08_02097NUC153 domain-containing protein. (733 aa)
PV08_11366RRM domain-containing protein. (660 aa)
PV08_11422Uncharacterized protein. (386 aa)
PV08_11404WD_REPEATS_REGION domain-containing protein. (443 aa)
PV08_10262Uncharacterized protein. (713 aa)
PV08_10119Uncharacterized protein. (597 aa)
PV08_10124DRIM domain-containing protein. (2590 aa)
PV08_10768Uncharacterized protein. (179 aa)
PV08_10864MI domain-containing protein. (843 aa)
PV08_09050WD_REPEATS_REGION domain-containing protein. (549 aa)
PV08_11002WD_REPEATS_REGION domain-containing protein. (984 aa)
PV08_09088Uncharacterized protein; Belongs to the DEAD box helicase family. (841 aa)
PV08_09342Brix domain-containing protein. (343 aa)
PV08_09454KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (335 aa)
PV08_09459Nop domain-containing protein. (517 aa)
PV08_09264Uncharacterized protein. (382 aa)
PV08_09595Uncharacterized protein. (504 aa)
PV08_09906U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (290 aa)
PV08_09931Sas10 domain-containing protein. (605 aa)
PV08_09817Nucleolar protein 58. (632 aa)
PV08_08466PUM-HD domain-containing protein. (685 aa)
PV08_08591U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (743 aa)
PV08_08317Uncharacterized protein. (262 aa)
PV08_08573Kri1_C domain-containing protein. (601 aa)
PV08_08859CBF domain-containing protein. (1043 aa)
PV08_08869Uncharacterized protein. (306 aa)
PV08_0873320S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (442 aa)
PV08_06744Utp12 domain-containing protein. (934 aa)
PV08_06741Bms1-type G domain-containing protein. (811 aa)
PV08_07317Uncharacterized protein. (628 aa)
PV08_07362NUC153 domain-containing protein. (717 aa)
PV08_07785CP-type G domain-containing protein. (549 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (781 aa)
PV08_05240Uncharacterized protein. (1067 aa)
PV08_0565860S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
PV08_06111Bms1-type G domain-containing protein. (1179 aa)
PV08_06256Uncharacterized protein. (231 aa)
PV08_03828U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (765 aa)
PV08_04284Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
PV08_04474Ipi1_N domain-containing protein. (331 aa)
PV08_04510Uncharacterized protein. (306 aa)
PV08_04110Fcf2 domain-containing protein. (228 aa)
PV08_05063Uncharacterized protein. (225 aa)
PV08_11346Brix domain-containing protein. (451 aa)
PV08_11351ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (480 aa)
PV08_11367RTC domain-containing protein. (448 aa)
PV08_02481WD_REPEATS_REGION domain-containing protein. (864 aa)
PV08_10734RNA helicase. (627 aa)
PV08_03084Uncharacterized protein. (710 aa)
PV08_03139rRNA 2'-O-methyltransferase fibrillarin. (324 aa)
PV08_10850Uncharacterized protein. (575 aa)
PV08_10941Uncharacterized protein. (388 aa)
PV08_03280BP28CT domain-containing protein. (1827 aa)
PV08_00334Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (761 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (248 aa)
PV08_08171WD_REPEATS_REGION domain-containing protein. (533 aa)
PV08_08236Uncharacterized protein. (739 aa)
PV08_01652Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (428 aa)
PV08_01257Uncharacterized protein. (1242 aa)
PV08_08617Brix domain-containing protein. (296 aa)
PV08_01973ATP-dependent RNA helicase DBP10. (911 aa)
PV08_01559Uncharacterized protein. (417 aa)
PV08_01564Uncharacterized protein. (1823 aa)
PV08_01815RIO domain-containing protein. (382 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1129 aa)
PV08_02135Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (250 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (830 aa)
PV08_07273WD_REPEATS_REGION domain-containing protein. (557 aa)
PV08_07318WD_REPEATS_REGION domain-containing protein. (603 aa)
PV08_07766U3 small nucleolar RNA-associated protein 22. (1121 aa)
PV08_05490Uncharacterized protein; Belongs to the DEAD box helicase family. (793 aa)
PV08_05647Uncharacterized protein. (958 aa)
PV08_05657Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (685 aa)
PV08_04094AB hydrolase-1 domain-containing protein. (380 aa)
PV08_04506Uncharacterized protein. (195 aa)
PV08_04814Uncharacterized protein. (273 aa)
PV08_04904WD_REPEATS_REGION domain-containing protein. (526 aa)
PV08_04914PINc domain-containing protein. (194 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (459 aa)
PV08_05034Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (583 aa)
PV08_03133Uncharacterized protein. (766 aa)
PV08_00719Brix domain-containing protein. (382 aa)
PV08_00754rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (127 aa)
PV08_00879Uncharacterized protein. (513 aa)
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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