STRINGSTRING
PV08_11351 PV08_11351 PV08_02481 PV08_02481 PV08_10941 PV08_10941 PV08_01257 PV08_01257 PV08_01564 PV08_01564 PV08_01815 PV08_01815 PV08_07273 PV08_07273 PV08_05647 PV08_05647 PV08_04104 PV08_04104 PV08_04370 PV08_04370 PV08_04814 PV08_04814 PV08_04914 PV08_04914 PV08_03133 PV08_03133 PV08_00879 PV08_00879 PV08_01683 PV08_01683 PV08_11766 PV08_11766 PV08_01405 PV08_01405 PV08_03611 PV08_03611 PV08_04787 PV08_04787 PV08_04666 PV08_04666 PV08_04368 PV08_04368 PV08_04238 PV08_04238 PV08_04037 PV08_04037 PV08_06133 PV08_06133 PV08_06893 PV08_06893 PV08_08575 PV08_08575 PV08_00741 PV08_00741 PV08_04926 PV08_04926 PV08_04670 PV08_04670 PV08_07878 PV08_07878 PV08_06952 PV08_06952 PV08_06657 PV08_06657 PV08_11804 PV08_11804 PV08_11964 PV08_11964 PV08_11422 PV08_11422 PV08_11404 PV08_11404 PV08_10119 PV08_10119 PV08_09454 PV08_09454 PV08_09931 PV08_09931 PV08_09817 PV08_09817 PV08_08573 PV08_08573 PV08_06744 PV08_06744 PV08_06749 PV08_06749 PV08_06741 PV08_06741 PV08_07362 PV08_07362 PV08_06111 PV08_06111 PV08_04284 PV08_04284 PV08_04110 PV08_04110 PV08_04286 PV08_04286
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV08_11351ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (480 aa)
PV08_02481WD_REPEATS_REGION domain-containing protein. (864 aa)
PV08_10941Uncharacterized protein. (388 aa)
PV08_01257Uncharacterized protein. (1242 aa)
PV08_01564Uncharacterized protein. (1823 aa)
PV08_01815RIO domain-containing protein. (382 aa)
PV08_07273WD_REPEATS_REGION domain-containing protein. (557 aa)
PV08_05647Uncharacterized protein. (958 aa)
PV08_04104Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (186 aa)
PV08_0437040S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
PV08_04814Uncharacterized protein. (273 aa)
PV08_04914PINc domain-containing protein. (194 aa)
PV08_03133Uncharacterized protein. (766 aa)
PV08_00879Uncharacterized protein. (513 aa)
PV08_01683Uncharacterized protein. (884 aa)
PV08_1176640S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (200 aa)
PV08_01405WD_REPEATS_REGION domain-containing protein. (990 aa)
PV08_0361140S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
PV08_04787Pre-rRNA-processing protein PNO1. (260 aa)
PV08_04666WD_REPEATS_REGION domain-containing protein. (963 aa)
PV08_0436840S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
PV08_04238WD_REPEATS_REGION domain-containing protein. (960 aa)
PV08_0403718S rRNA biogenesis protein RCL1. (406 aa)
PV08_06133WD_REPEATS_REGION domain-containing protein. (1505 aa)
PV08_06893Uncharacterized protein. (938 aa)
PV08_08575Uncharacterized protein. (459 aa)
PV08_00741Uncharacterized protein. (299 aa)
PV08_04926Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (221 aa)
PV08_04670WD_REPEATS_REGION domain-containing protein. (588 aa)
PV08_07878WD_REPEATS_REGION domain-containing protein. (533 aa)
PV08_06952Uncharacterized protein. (213 aa)
PV08_06657CBF domain-containing protein. (287 aa)
PV08_11804rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (397 aa)
PV08_11964Uncharacterized protein. (258 aa)
PV08_11422Uncharacterized protein. (386 aa)
PV08_11404WD_REPEATS_REGION domain-containing protein. (443 aa)
PV08_10119Uncharacterized protein. (597 aa)
PV08_09454KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (335 aa)
PV08_09931Sas10 domain-containing protein. (605 aa)
PV08_09817Nucleolar protein 58. (632 aa)
PV08_08573Kri1_C domain-containing protein. (601 aa)
PV08_06744Utp12 domain-containing protein. (934 aa)
PV08_06749Uncharacterized protein. (410 aa)
PV08_06741Bms1-type G domain-containing protein. (811 aa)
PV08_07362NUC153 domain-containing protein. (717 aa)
PV08_06111Bms1-type G domain-containing protein. (1179 aa)
PV08_04284Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
PV08_04110Fcf2 domain-containing protein. (228 aa)
PV08_0428640S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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