27 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_02441	Uncharacterized protein. (561 aa)
	PV08_02811	NTP_transf_9 domain-containing protein. (163 aa)
	PV08_02758	5'/3'-nucleotidase SurE. (812 aa)
	PV08_03451	Uncharacterized protein. (232 aa)
	PV08_00518	RPOL4c domain-containing protein. (152 aa)
	PV08_00284	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	PV08_01748	Uncharacterized protein. (481 aa)
	PV08_01688	Uncharacterized protein. (360 aa)
	PV08_08489	RNB domain-containing protein. (1350 aa)
	PV08_09240	Nudix hydrolase domain-containing protein. (897 aa)
	PV08_03982	Endo/exonuclease/phosphatase domain-containing protein. (687 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_00962	Uncharacterized protein. (330 aa)
	PV08_11437	Uncharacterized protein. (2310 aa)
	PV08_07763	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (512 aa)
	PV08_07552	Uncharacterized protein. (292 aa)
	PV08_02116	PAT1 domain-containing protein. (799 aa)
	PV08_04121	Uncharacterized protein. (459 aa)
	PV08_10720	NTP_transf_9 domain-containing protein. (266 aa)
	PV08_09549	Uncharacterized protein. (1686 aa)
	PV08_08272	Uncharacterized protein. (396 aa)
	PV08_08934	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1398 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (128 aa)
	PV08_06654	Protein vts1. (611 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
	PV08_07117	Uncharacterized protein. (268 aa)
	PV08_04659	U6 snRNA-associated Sm-like protein LSm6. (93 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM4	A0A0D2B6L3	A0A0D1YFQ5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.973
LSM1	PV08_00284	A0A0D2B6L3	A0A0D2BM76	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.972
LSM1	PV08_00962	A0A0D2B6L3	A0A0D2A6I5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.817
LSM1	PV08_02116	A0A0D2B6L3	A0A0D1Z1M6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	PAT1 domain-containing protein.	0.966
LSM1	PV08_02441	A0A0D2B6L3	A0A0D2BGM8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.572
LSM1	PV08_02811	A0A0D2B6L3	A0A0D2BHY1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NTP_transf_9 domain-containing protein.	0.809
LSM1	PV08_03982	A0A0D2B6L3	A0A0D1ZVP7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Endo/exonuclease/phosphatase domain-containing protein.	0.427
LSM1	PV08_04659	A0A0D2B6L3	A0A0D2BFU5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm6.	0.970
LSM1	PV08_07552	A0A0D2B6L3	A0A0D1ZPL9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.850
LSM1	PV08_07763	A0A0D2B6L3	A0A0D1YJ66	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.968
LSM1	PV08_08934	A0A0D2B6L3	A0A0D2B456	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.919
LSM1	PV08_09240	A0A0D2B6L3	A0A0D1YAL5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Nudix hydrolase domain-containing protein.	0.850
LSM1	PV08_10720	A0A0D2B6L3	A0A0D2AYE8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NTP_transf_9 domain-containing protein.	0.809
LSM4	LSM1	A0A0D1YFQ5	A0A0D2B6L3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.973
LSM4	PV08_00284	A0A0D1YFQ5	A0A0D2BM76	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	PV08_00962	A0A0D1YFQ5	A0A0D2A6I5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.903
LSM4	PV08_01748	A0A0D1YFQ5	A0A0D2BQD3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.442
LSM4	PV08_02116	A0A0D1YFQ5	A0A0D1Z1M6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PAT1 domain-containing protein.	0.999
LSM4	PV08_02441	A0A0D1YFQ5	A0A0D2BGM8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.583
LSM4	PV08_02758	A0A0D1YFQ5	A0A0D2BIS8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'/3'-nucleotidase SurE.	0.444