11 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_04513	RNA_pol_L_2 domain-containing protein. (129 aa)
	PV08_11607	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1739 aa)
	PV08_10959	Uncharacterized protein. (441 aa)
	PV08_01074	Uncharacterized protein. (478 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_00668	RPOLD domain-containing protein. (373 aa)
	PV08_05815	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1213 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00668	PV08_00705	A0A0D2BMD8	A0A0D2BNM3	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
PV08_00668	PV08_01074	A0A0D2BMD8	A0A0D2CAC6	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
PV08_00668	PV08_04513	A0A0D2BMD8	A0A0D1YQ14	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
PV08_00668	PV08_05815	A0A0D2BMD8	A0A0D2BAY4	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PV08_00668	PV08_08398	A0A0D2BMD8	A0A0D1YDS8	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
PV08_00668	PV08_09080	A0A0D2BMD8	A0A0D2AYL3	RPOLD domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PV08_00668	PV08_09898	A0A0D2BMD8	A0A0D2B1Z3	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
PV08_00668	PV08_10959	A0A0D2BMD8	A0A0D1ZF82	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
PV08_00668	PV08_11001	A0A0D2BMD8	A0A0D2BK91	RPOLD domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.999
PV08_00668	PV08_11607	A0A0D2BMD8	A0A0D2AV95	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PV08_00705	PV08_00668	A0A0D2BNM3	A0A0D2BMD8	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
PV08_00705	PV08_01074	A0A0D2BNM3	A0A0D2CAC6	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00705	PV08_04513	A0A0D2BNM3	A0A0D1YQ14	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
PV08_00705	PV08_05815	A0A0D2BNM3	A0A0D2BAY4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PV08_00705	PV08_08398	A0A0D2BNM3	A0A0D1YDS8	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00705	PV08_09080	A0A0D2BNM3	A0A0D2AYL3	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PV08_00705	PV08_09898	A0A0D2BNM3	A0A0D2B1Z3	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00705	PV08_10959	A0A0D2BNM3	A0A0D1ZF82	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00705	PV08_11001	A0A0D2BNM3	A0A0D2BK91	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.999
PV08_00705	PV08_11607	A0A0D2BNM3	A0A0D2AV95	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999