9 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_07678	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates. (314 aa)
	PV08_06050	Uncharacterized protein. (798 aa)
	PV08_03927	PfkB domain-containing protein. (338 aa)
	PV08_07605	CMP/dCMP-type deaminase domain-containing protein. (193 aa)
	PV08_05489	Adenine phosphoribosyltransferase. (214 aa)
	PV08_06069	IU_nuc_hydro domain-containing protein. (365 aa)
	PV08_03195	A_deaminase domain-containing protein. (614 aa)
	PV08_00310	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (172 aa)
	PV08_01395	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation. (388 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00310	PV08_03927	A0A0D1YWQ2	A0A0D2BCN1	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	PfkB domain-containing protein.	0.720
PV08_00310	PV08_05489	A0A0D1YWQ2	A0A0D2B964	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Adenine phosphoribosyltransferase.	0.404
PV08_00310	PV08_06050	A0A0D1YWQ2	A0A0D2BXM0	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Uncharacterized protein.	0.797
PV08_00310	PV08_06069	A0A0D1YWQ2	A0A0D2BAQ8	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	IU_nuc_hydro domain-containing protein.	0.797
PV08_00310	PV08_07605	A0A0D1YWQ2	A0A0D2B810	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	CMP/dCMP-type deaminase domain-containing protein.	0.688
PV08_00310	PV08_07678	A0A0D1YWQ2	A0A0D2B7K9	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.805
PV08_01395	PV08_03195	A0A0D2A7Q0	A0A0D1YUH3	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.	A_deaminase domain-containing protein.	0.762
PV08_01395	PV08_06050	A0A0D2A7Q0	A0A0D2BXM0	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.	Uncharacterized protein.	0.773
PV08_01395	PV08_06069	A0A0D2A7Q0	A0A0D2BAQ8	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.	IU_nuc_hydro domain-containing protein.	0.773
PV08_01395	PV08_07678	A0A0D2A7Q0	A0A0D2B7K9	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.808
PV08_03195	PV08_01395	A0A0D1YUH3	A0A0D2A7Q0	A_deaminase domain-containing protein.	IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.	0.762
PV08_03195	PV08_03927	A0A0D1YUH3	A0A0D2BCN1	A_deaminase domain-containing protein.	PfkB domain-containing protein.	0.883
PV08_03195	PV08_05489	A0A0D1YUH3	A0A0D2B964	A_deaminase domain-containing protein.	Adenine phosphoribosyltransferase.	0.833
PV08_03195	PV08_06050	A0A0D1YUH3	A0A0D2BXM0	A_deaminase domain-containing protein.	Uncharacterized protein.	0.693
PV08_03195	PV08_06069	A0A0D1YUH3	A0A0D2BAQ8	A_deaminase domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.693
PV08_03195	PV08_07678	A0A0D1YUH3	A0A0D2B7K9	A_deaminase domain-containing protein.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.745
PV08_03927	PV08_00310	A0A0D2BCN1	A0A0D1YWQ2	PfkB domain-containing protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.720
PV08_03927	PV08_03195	A0A0D2BCN1	A0A0D1YUH3	PfkB domain-containing protein.	A_deaminase domain-containing protein.	0.883
PV08_03927	PV08_05489	A0A0D2BCN1	A0A0D2B964	PfkB domain-containing protein.	Adenine phosphoribosyltransferase.	0.953
PV08_03927	PV08_06050	A0A0D2BCN1	A0A0D2BXM0	PfkB domain-containing protein.	Uncharacterized protein.	0.728