(67 nodes) Fatty acid oxidation network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_11837	Uncharacterized protein. (249 aa)
	PV08_11041	Uncharacterized protein; Belongs to the TPP enzyme family. (585 aa)
	PV08_11003	Uncharacterized protein. (548 aa)
	PV08_09406	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (292 aa)
	PV08_09608	Uncharacterized protein. (422 aa)
	PV08_08388	Uncharacterized protein. (280 aa)
	PV08_06982	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (422 aa)
	PV08_07083	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	PV08_05821	Uncharacterized protein. (427 aa)
	PV08_06357	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (703 aa)
	PV08_04167	Uncharacterized protein. (903 aa)
	PV08_03230	FMN hydroxy acid dehydrogenase domain-containing protein. (373 aa)
	PV08_00053	Peroxisomal hydratase-dehydrogenase-epimerase. (901 aa)
	PV08_00611	Uncharacterized protein. (204 aa)
	PV08_00736	Uncharacterized protein. (280 aa)
	PV08_01273	Uncharacterized protein. (460 aa)
	PV08_01319	Cytochrome b5 heme-binding domain-containing protein. (541 aa)
	PV08_01696	FMN hydroxy acid dehydrogenase domain-containing protein. (487 aa)
	PV08_10858	Uncharacterized protein. (318 aa)
	PV08_10903	FMN hydroxy acid dehydrogenase domain-containing protein. (389 aa)
	PV08_09809	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (436 aa)
	PV08_08234	Uncharacterized protein. (426 aa)
	PV08_08334	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (699 aa)
	PV08_06973	Uncharacterized protein. (715 aa)
	PV08_07004	Uncharacterized protein; Belongs to the TPP enzyme family. (633 aa)
	PV08_05302	Uncharacterized protein. (471 aa)
	PV08_05498	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (457 aa)
	PV08_05650	Uncharacterized protein. (238 aa)
	PV08_06358	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (246 aa)
	PV08_04168	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (709 aa)
	PV08_01007	Uncharacterized protein. (425 aa)
	PV08_01430	MaoC-like domain-containing protein. (906 aa)
	PV08_11784	ETF domain-containing protein. (349 aa)
	PV08_11305	Uncharacterized protein. (845 aa)
	PV08_10247	Uncharacterized protein. (426 aa)
	PV08_10884	Uncharacterized protein. (392 aa)
	PV08_09871	Uncharacterized protein. (316 aa)
	PV08_08370	Uncharacterized protein. (443 aa)
	PV08_08192	Uncharacterized protein. (755 aa)
	PV08_08661	Zn(2)-C6 fungal-type domain-containing protein. (649 aa)
	PV08_08951	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (311 aa)
	PV08_07237	Uncharacterized protein. (286 aa)
	PV08_07077	Uncharacterized protein. (85 aa)
	PV08_07127	FAD-binding PCMH-type domain-containing protein. (486 aa)
	PV08_07543	Uncharacterized protein. (456 aa)
	PV08_07279	Uncharacterized protein. (287 aa)
	PV08_07479	Uncharacterized protein. (167 aa)
	PV08_07905	Uncharacterized protein. (613 aa)
	PV08_05928	FAD-binding PCMH-type domain-containing protein. (492 aa)
	PV08_05938	Uncharacterized protein; Belongs to the TPP enzyme family. (565 aa)
	PV08_04023	Uncharacterized protein. (709 aa)
	PV08_04159	Uncharacterized protein. (422 aa)
	PV08_04045	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (518 aa)
	PV08_04166	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
	PV08_04426	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (345 aa)
	PV08_11306	Uncharacterized protein. (573 aa)
	PV08_10183	Uncharacterized protein. (286 aa)
	PV08_02934	Uncharacterized protein. (324 aa)
	PV08_03239	Uncharacterized protein. (821 aa)
	PV08_03377	Uncharacterized protein. (636 aa)
	PV08_01426	Uncharacterized protein; Belongs to the TPP enzyme family. (614 aa)
	PV08_01035	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (412 aa)
	PV08_06085	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (425 aa)
	PV08_02662	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (459 aa)
	PV08_01719	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (282 aa)
	PV08_01959	Uncharacterized protein. (433 aa)
	PV08_02089	Uncharacterized protein. (269 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00053	PV08_00736	A0A0D1YW46	A0A0D1YY06	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.715
PV08_00053	PV08_01007	A0A0D1YW46	A0A0D2A6P2	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.479
PV08_00053	PV08_01035	A0A0D1YW46	A0A0D2BPK6	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.641
PV08_00053	PV08_01273	A0A0D1YW46	A0A0D1YZF7	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.566
PV08_00053	PV08_01319	A0A0D1YW46	A0A0D1YZJ3	Peroxisomal hydratase-dehydrogenase-epimerase.	Cytochrome b5 heme-binding domain-containing protein.	0.479
PV08_00053	PV08_01426	A0A0D1YW46	A0A0D2BPH8	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the TPP enzyme family.	0.476
PV08_00053	PV08_01719	A0A0D1YW46	A0A0D2CCC2	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.567
PV08_00053	PV08_01959	A0A0D1YW46	A0A0D2CCZ6	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.479
PV08_00053	PV08_02089	A0A0D1YW46	A0A0D2CDD2	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.715
PV08_00053	PV08_02662	A0A0D1YW46	A0A0D2C419	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.939
PV08_00053	PV08_02934	A0A0D1YW46	A0A0D2BJ85	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.547
PV08_00053	PV08_03239	A0A0D1YW46	A0A0D2BK53	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.474
PV08_00053	PV08_03377	A0A0D1YW46	A0A0D2BKJ4	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.529
PV08_00053	PV08_04045	A0A0D1YW46	A0A0D2BE34	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.760
PV08_00053	PV08_04159	A0A0D1YW46	A0A0D2BDF6	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.479
PV08_00053	PV08_04166	A0A0D1YW46	A0A0D2BEH1	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.760
PV08_00053	PV08_04168	A0A0D1YW46	A0A0D1ZWD4	Peroxisomal hydratase-dehydrogenase-epimerase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.675
PV08_00053	PV08_05302	A0A0D1YW46	A0A0D1ZR13	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.592
PV08_00053	PV08_05498	A0A0D1YW46	A0A0D1ZRR1	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.939
PV08_00053	PV08_05821	A0A0D1YW46	A0A0D1YL45	Peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.614