23 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_09930	Uncharacterized protein. (359 aa)
	PV08_05059	Uncharacterized protein. (298 aa)
	PV08_04753	Uncharacterized protein. (382 aa)
	PV08_05395	Uncharacterized protein. (670 aa)
	PV08_02133	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...] (239 aa)
	PV08_03519	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (434 aa)
	PV08_03197	Elongation of fatty acids protein. (742 aa)
	PV08_10509	Aminotran_1_2 domain-containing protein. (508 aa)
	PV08_06194	Endo/exonuclease/phosphatase domain-containing protein. (501 aa)
	PV08_06099	CAP10 domain-containing protein. (595 aa)
	PV08_08894	Uncharacterized protein. (341 aa)
	PV08_09928	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides. (378 aa)
	PV08_10894	acidPPc domain-containing protein. (424 aa)
	PV08_00842	DAGKc domain-containing protein. (368 aa)
	PV08_02510	Uncharacterized protein. (239 aa)
	PV08_04373	Uncharacterized protein. (1305 aa)
	PV08_09900	Uncharacterized protein. (303 aa)
	PV08_09321	Uncharacterized protein. (252 aa)
	PV08_03215	Neutral ceramidase. (774 aa)
	PV08_02995	Elongation of fatty acids protein. (343 aa)
	PV08_04503	Uncharacterized protein. (349 aa)
	PV08_08448	Elongation of fatty acids protein. (353 aa)
	PV08_08023	DAGKc domain-containing protein. (575 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00842	PV08_02510	A0A0D2A649	A0A0D1ZZR0	DAGKc domain-containing protein.	Uncharacterized protein.	0.436
PV08_00842	PV08_03215	A0A0D2A649	A0A0D1YUJ2	DAGKc domain-containing protein.	Neutral ceramidase.	0.735
PV08_00842	PV08_03519	A0A0D2A649	A0A0D2BKU6	DAGKc domain-containing protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.799
PV08_00842	PV08_05059	A0A0D2A649	A0A0D2C2K4	DAGKc domain-containing protein.	Uncharacterized protein.	0.591
PV08_00842	PV08_05395	A0A0D2A649	A0A0D2BVN2	DAGKc domain-containing protein.	Uncharacterized protein.	0.436
PV08_00842	PV08_06194	A0A0D2A649	A0A0D2BAY1	DAGKc domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.591
PV08_00842	PV08_08894	A0A0D2A649	A0A0D2B425	DAGKc domain-containing protein.	Uncharacterized protein.	0.648
PV08_00842	PV08_09321	A0A0D2A649	A0A0D1ZGF7	DAGKc domain-containing protein.	Uncharacterized protein.	0.648
PV08_00842	PV08_09900	A0A0D2A649	A0A0D1ZIC5	DAGKc domain-containing protein.	Uncharacterized protein.	0.436
PV08_00842	PV08_09928	A0A0D2A649	A0A0D2B222	DAGKc domain-containing protein.	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	0.731
PV08_00842	PV08_09930	A0A0D2A649	A0A0D1ZIF9	DAGKc domain-containing protein.	Uncharacterized protein.	0.778
PV08_00842	PV08_10509	A0A0D2A649	A0A0D2BIL7	DAGKc domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.421
PV08_02133	PV08_02995	A0A0D2BR98	A0A0D1YTW8	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	Elongation of fatty acids protein.	0.784
PV08_02133	PV08_03197	A0A0D2BR98	A0A0D2BJ18	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	Elongation of fatty acids protein.	0.689
PV08_02133	PV08_08448	A0A0D2BR98	A0A0D1YDW5	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]	Elongation of fatty acids protein.	0.784
PV08_02510	PV08_00842	A0A0D1ZZR0	A0A0D2A649	Uncharacterized protein.	DAGKc domain-containing protein.	0.436
PV08_02510	PV08_03215	A0A0D1ZZR0	A0A0D1YUJ2	Uncharacterized protein.	Neutral ceramidase.	0.653
PV08_02510	PV08_03519	A0A0D1ZZR0	A0A0D2BKU6	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.669
PV08_02510	PV08_08023	A0A0D1ZZR0	A0A0D1YCZ4	Uncharacterized protein.	DAGKc domain-containing protein.	0.436
PV08_02510	PV08_08894	A0A0D1ZZR0	A0A0D2B425	Uncharacterized protein.	Uncharacterized protein.	0.524