13 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_06657	CBF domain-containing protein. (287 aa)
	PV08_06102	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (261 aa)
	PV08_03935	Uncharacterized protein. (471 aa)
	PV08_04136	Uncharacterized protein. (900 aa)
	PV08_11804	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (397 aa)
	PV08_10124	DRIM domain-containing protein. (2590 aa)
	PV08_09454	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (335 aa)
	PV08_08317	Uncharacterized protein. (262 aa)
	PV08_08733	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (442 aa)
	PV08_06741	Bms1-type G domain-containing protein. (811 aa)
	PV08_01815	RIO domain-containing protein. (382 aa)
	PV08_00879	Uncharacterized protein. (513 aa)
	PV08_07273	WD_REPEATS_REGION domain-containing protein. (557 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00879	PV08_01815	A0A0D2C9P3	A0A0D2BS26	Uncharacterized protein.	RIO domain-containing protein.	0.994
PV08_00879	PV08_03935	A0A0D2C9P3	A0A0D1YNQ8	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00879	PV08_04136	A0A0D2C9P3	A0A0D1YP66	Uncharacterized protein.	Uncharacterized protein.	0.998
PV08_00879	PV08_06102	A0A0D2C9P3	A0A0D1YM33	Uncharacterized protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.995
PV08_00879	PV08_06657	A0A0D2C9P3	A0A0D1YFP1	Uncharacterized protein.	CBF domain-containing protein.	0.997
PV08_00879	PV08_06741	A0A0D2C9P3	A0A0D2B5K1	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
PV08_00879	PV08_07273	A0A0D2C9P3	A0A0D2BTD2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
PV08_00879	PV08_08317	A0A0D2C9P3	A0A0D2B3C6	Uncharacterized protein.	Uncharacterized protein.	0.857
PV08_00879	PV08_08733	A0A0D2C9P3	A0A0D2B4F4	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
PV08_00879	PV08_09454	A0A0D2C9P3	A0A0D2AZM7	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
PV08_00879	PV08_10124	A0A0D2C9P3	A0A0D2AWF4	Uncharacterized protein.	DRIM domain-containing protein.	0.993
PV08_00879	PV08_11804	A0A0D2C9P3	A0A0D2ATK4	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.998
PV08_01815	PV08_00879	A0A0D2BS26	A0A0D2C9P3	RIO domain-containing protein.	Uncharacterized protein.	0.994
PV08_01815	PV08_03935	A0A0D2BS26	A0A0D1YNQ8	RIO domain-containing protein.	Uncharacterized protein.	0.999
PV08_01815	PV08_04136	A0A0D2BS26	A0A0D1YP66	RIO domain-containing protein.	Uncharacterized protein.	0.763
PV08_01815	PV08_06102	A0A0D2BS26	A0A0D1YM33	RIO domain-containing protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.995
PV08_01815	PV08_06657	A0A0D2BS26	A0A0D1YFP1	RIO domain-containing protein.	CBF domain-containing protein.	0.674
PV08_01815	PV08_06741	A0A0D2BS26	A0A0D2B5K1	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.997
PV08_01815	PV08_07273	A0A0D2BS26	A0A0D2BTD2	RIO domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.499
PV08_01815	PV08_08317	A0A0D2BS26	A0A0D2B3C6	RIO domain-containing protein.	Uncharacterized protein.	0.595