30 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_02142	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (320 aa)
	PV08_10948	Uncharacterized protein. (349 aa)
	PV08_06282	DBF4-type domain-containing protein. (631 aa)
	PV08_03454	WD_REPEATS_REGION domain-containing protein. (611 aa)
	PV08_01956	Uncharacterized protein. (546 aa)
	PV08_11319	Uncharacterized protein; Belongs to the cyclin family. (506 aa)
	PV08_08625	Uncharacterized protein. (297 aa)
	PV08_00922	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (115 aa)
	PV08_11154	WD_REPEATS_REGION domain-containing protein. (580 aa)
	PV08_10077	Guanine nucleotide-binding protein subunit beta-like protein. (316 aa)
	PV08_10374	Plus3 domain-containing protein. (611 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_08971	ATP-dependent Clp protease, ATP-binding subunit ClpX. (618 aa)
	PV08_07244	Uncharacterized protein. (707 aa)
	PV08_07855	BAH domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1056 aa)
	PV08_05223	Uncharacterized protein. (279 aa)
	PV08_11935	U-box domain-containing protein. (1100 aa)
	PV08_04241	Uncharacterized protein. (1610 aa)
	PV08_04559	Uncharacterized protein. (2687 aa)
	PV08_10293	HORMA domain-containing protein. (226 aa)
	PV08_03522	WD_REPEATS_REGION domain-containing protein. (1434 aa)
	PV08_00388	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (457 aa)
	PV08_00092	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (474 aa)
	PV08_09791	ATG11 domain-containing protein. (1411 aa)
	PV08_01025	Uncharacterized protein. (295 aa)
	PV08_06745	WD_REPEATS_REGION domain-containing protein. (643 aa)
	PV08_07136	CYCLIN domain-containing protein; Belongs to the cyclin family. (410 aa)
	PV08_02747	Uncharacterized protein. (396 aa)
	PV08_02898	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	PV08_00126	Uncharacterized protein. (645 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00092	PV08_01025	A0A0D2BLU8	A0A0D2BPJ9	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.950
PV08_00092	PV08_03454	A0A0D2BLU8	A0A0D1YV46	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	WD_REPEATS_REGION domain-containing protein.	0.658
PV08_00092	PV08_05223	A0A0D2BLU8	A0A0D2B8C8	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.760
PV08_00092	PV08_06745	A0A0D2BLU8	A0A0D2BRX2	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	WD_REPEATS_REGION domain-containing protein.	0.658
PV08_00092	PV08_11154	A0A0D2BLU8	A0A0D2ATX5	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	WD_REPEATS_REGION domain-containing protein.	0.658
PV08_00126	PV08_03454	A0A0D2C7N6	A0A0D1YV46	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.565
PV08_00126	PV08_06745	A0A0D2C7N6	A0A0D2BRX2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.565
PV08_00126	PV08_11154	A0A0D2C7N6	A0A0D2ATX5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.565
PV08_00922	PV08_03454	A0A0D2A6D1	A0A0D1YV46	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_00922	PV08_06745	A0A0D2A6D1	A0A0D2BRX2	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_00922	PV08_10293	A0A0D2A6D1	A0A0D2BI20	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	HORMA domain-containing protein.	0.714
PV08_00922	PV08_11154	A0A0D2A6D1	A0A0D2ATX5	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_01025	PV08_00092	A0A0D2BPJ9	A0A0D2BLU8	Uncharacterized protein.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.950
PV08_01025	PV08_02747	A0A0D2BPJ9	A0A0D2C4E5	Uncharacterized protein.	Uncharacterized protein.	0.448
PV08_01025	PV08_05223	A0A0D2BPJ9	A0A0D2B8C8	Uncharacterized protein.	Uncharacterized protein.	0.749
PV08_01025	PV08_08625	A0A0D2BPJ9	A0A0D1ZKT7	Uncharacterized protein.	Uncharacterized protein.	0.470
PV08_01956	PV08_04241	A0A0D1Z139	A0A0D2BEP2	Uncharacterized protein.	Uncharacterized protein.	0.670
PV08_01956	PV08_10077	A0A0D1Z139	A0A0D2AVL6	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta-like protein.	0.559
PV08_02747	PV08_01025	A0A0D2C4E5	A0A0D2BPJ9	Uncharacterized protein.	Uncharacterized protein.	0.448
PV08_02747	PV08_05223	A0A0D2C4E5	A0A0D2B8C8	Uncharacterized protein.	Uncharacterized protein.	0.448