78 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_07854	40S ribosomal protein S19. (154 aa)
	PV08_09931	Sas10 domain-containing protein. (605 aa)
	PV08_09817	Nucleolar protein 58. (632 aa)
	PV08_08591	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (743 aa)
	PV08_08573	Kri1_C domain-containing protein. (601 aa)
	PV08_08733	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (442 aa)
	PV08_06744	Utp12 domain-containing protein. (934 aa)
	PV08_06749	Uncharacterized protein. (410 aa)
	PV08_06741	Bms1-type G domain-containing protein. (811 aa)
	PV08_07362	NUC153 domain-containing protein. (717 aa)
	PV08_05298	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	PV08_06111	Bms1-type G domain-containing protein. (1179 aa)
	PV08_04284	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
	PV08_04110	Fcf2 domain-containing protein. (228 aa)
	PV08_04286	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PV08_04682	Uncharacterized protein. (146 aa)
	PV08_04659	U6 snRNA-associated Sm-like protein LSm6. (93 aa)
	PV08_11351	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (480 aa)
	PV08_02481	WD_REPEATS_REGION domain-containing protein. (864 aa)
	PV08_10850	Uncharacterized protein. (575 aa)
	PV08_10941	Uncharacterized protein. (388 aa)
	PV08_01257	Uncharacterized protein. (1242 aa)
	PV08_01564	Uncharacterized protein. (1823 aa)
	PV08_01815	RIO domain-containing protein. (382 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1129 aa)
	PV08_07273	WD_REPEATS_REGION domain-containing protein. (557 aa)
	PV08_05647	Uncharacterized protein. (958 aa)
	PV08_06549	Uncharacterized protein. (253 aa)
	PV08_04104	Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (186 aa)
	PV08_04140	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PV08_04370	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PV08_04814	Uncharacterized protein. (273 aa)
	PV08_04914	PINc domain-containing protein. (194 aa)
	PV08_03133	Uncharacterized protein. (766 aa)
	PV08_00879	Uncharacterized protein. (513 aa)
	PV08_01271	Uncharacterized protein. (1598 aa)
	PV08_01412	Uncharacterized protein. (1119 aa)
	PV08_01683	Uncharacterized protein. (884 aa)
	PV08_00336	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	PV08_03611	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
	PV08_04787	Pre-rRNA-processing protein PNO1. (260 aa)
	PV08_04666	WD_REPEATS_REGION domain-containing protein. (963 aa)
	PV08_04368	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PV08_04238	WD_REPEATS_REGION domain-containing protein. (960 aa)
	PV08_04037	18S rRNA biogenesis protein RCL1. (406 aa)
	PV08_06238	Ribosomal_S7 domain-containing protein. (356 aa)
	PV08_06133	WD_REPEATS_REGION domain-containing protein. (1505 aa)
	PV08_06893	Uncharacterized protein. (938 aa)
	PV08_08575	Uncharacterized protein. (459 aa)
	TSR3	Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (392 aa)
	PV08_00741	Uncharacterized protein. (299 aa)
	PV08_03275	Uncharacterized protein. (703 aa)
	PV08_03155	Uncharacterized protein. (296 aa)
	PV08_01405	WD_REPEATS_REGION domain-containing protein. (990 aa)
	PV08_11964	Uncharacterized protein. (258 aa)
	PV08_11744	Uncharacterized protein. (713 aa)
	PV08_11804	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (397 aa)
	PV08_11766	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (200 aa)
	PV08_11422	Uncharacterized protein. (386 aa)
	PV08_11404	WD_REPEATS_REGION domain-containing protein. (443 aa)
	PV08_04926	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (221 aa)
	PV08_09454	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (335 aa)
	PV08_04911	40S ribosomal protein S28. (68 aa)
	PV08_04670	WD_REPEATS_REGION domain-containing protein. (588 aa)
	PV08_04136	Uncharacterized protein. (900 aa)
	PV08_03935	Uncharacterized protein. (471 aa)
	PV08_07878	WD_REPEATS_REGION domain-containing protein. (533 aa)
	PV08_07490	BUD22 domain-containing protein. (506 aa)
	PV08_11002	WD_REPEATS_REGION domain-containing protein. (984 aa)
	PV08_10992	Sm domain-containing protein. (134 aa)
	PV08_10864	MI domain-containing protein. (843 aa)
	PV08_10428	PDCD2_C domain-containing protein. (405 aa)
	PV08_10119	Uncharacterized protein. (597 aa)
	PV08_07118	NUC173 domain-containing protein. (1281 aa)
	PV08_06952	Uncharacterized protein. (213 aa)
	PV08_06657	CBF domain-containing protein. (287 aa)
	PV08_08053	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (287 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	PV08_00336	A0A0D2BS61	A0A0D2A4J8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.943
NAT10	PV08_00741	A0A0D2BS61	A0A0D1YY12	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.930
NAT10	PV08_00879	A0A0D2BS61	A0A0D2C9P3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.997
NAT10	PV08_01257	A0A0D2BS61	A0A0D2BQA9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.963
NAT10	PV08_01405	A0A0D2BS61	A0A0D2A7R1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.994
NAT10	PV08_01412	A0A0D2BS61	A0A0D2CBA7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.914
NAT10	PV08_01564	A0A0D2BS61	A0A0D2BRE7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.992
NAT10	PV08_01683	A0A0D2BS61	A0A0D2CC96	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.631
NAT10	PV08_01815	A0A0D2BS61	A0A0D2BS26	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RIO domain-containing protein.	0.693
NAT10	PV08_02481	A0A0D2BS61	A0A0D2BGR1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.997
NAT10	PV08_03133	A0A0D2BS61	A0A0D2C5I2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.902
NAT10	PV08_03155	A0A0D2BS61	A0A0D1YUD5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.991
NAT10	PV08_03275	A0A0D2BS61	A0A0D1YUR0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.861
NAT10	PV08_03935	A0A0D2BS61	A0A0D1YNQ8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.721
NAT10	PV08_04037	A0A0D2BS61	A0A0D1ZVW7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	18S rRNA biogenesis protein RCL1.	0.985
NAT10	PV08_04110	A0A0D2BS61	A0A0D2BEA1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Fcf2 domain-containing protein.	0.966
NAT10	PV08_04136	A0A0D2BS61	A0A0D1YP66	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.998
NAT10	PV08_04238	A0A0D2BS61	A0A0D1ZWJ9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.992
NAT10	PV08_04284	A0A0D2BS61	A0A0D2BDS0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.978
NAT10	PV08_04286	A0A0D2BS61	A0A0D2BER7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.944