56 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_06852	SGF29 C-terminal domain-containing protein. (318 aa)
	PV08_05664	Uncharacterized protein. (245 aa)
	PV08_05700	MRG domain-containing protein. (324 aa)
	PV08_06277	Uncharacterized protein. (139 aa)
	PV08_02945	Uncharacterized protein. (356 aa)
	PV08_02975	CHZ domain-containing protein. (117 aa)
	PV08_02246	Uncharacterized protein. (235 aa)
	PV08_11209	WD_REPEATS_REGION domain-containing protein. (624 aa)
	PV08_10226	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1258 aa)
	PV08_10667	YDG domain-containing protein. (567 aa)
	PV08_06627	Uncharacterized protein. (1133 aa)
	PV08_06743	Uncharacterized protein. (987 aa)
	PV08_05403	ING domain-containing protein. (780 aa)
	PV08_05711	CASPASE_P20 domain-containing protein. (579 aa)
	PV08_10110	YL1_C domain-containing protein. (705 aa)
	PV08_02840	Uncharacterized protein. (1545 aa)
	PV08_00922	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (115 aa)
	PV08_12027	Chromo domain-containing protein. (251 aa)
	PV08_11853	Chromo domain-containing protein. (251 aa)
	PV08_11169	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly. (285 aa)
	PV08_10773	Uncharacterized protein. (1582 aa)
	PV08_09015	Helo_like_N domain-containing protein. (423 aa)
	PV08_10937	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1421 aa)
	PV08_09267	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones. (538 aa)
	PV08_09277	Uncharacterized protein. (247 aa)
	PV08_09382	Uncharacterized protein. (607 aa)
	PV08_09539	Chromo domain-containing protein. (1113 aa)
	PV08_06919	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1311 aa)
	PV08_06974	Uncharacterized protein. (704 aa)
	PV08_07399	Uncharacterized protein. (428 aa)
	PV08_05773	Uncharacterized protein. (2462 aa)
	PV08_06049	Uncharacterized protein. (840 aa)
	PV08_05740	WD_REPEATS_REGION domain-containing protein. (519 aa)
	PV08_03917	PHD domain-containing protein. (575 aa)
	PV08_06482	Chromo domain-containing protein. (251 aa)
	PV08_04234	Uncharacterized protein. (633 aa)
	PV08_04266	Uncharacterized protein. (1424 aa)
	PV08_11160	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (393 aa)
	PV08_10218	WD_REPEATS_REGION domain-containing protein. (782 aa)
	PV08_10479	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (436 aa)
	PV08_09303	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (316 aa)
	PV08_00588	SET domain-containing protein. (927 aa)
	PV08_08517	PHD-type domain-containing protein. (466 aa)
	PV08_06609	SHNi-TPR domain-containing protein. (500 aa)
	PV08_06965	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (616 aa)
	PV08_07006	Chromatin modification-related protein. (767 aa)
	PV08_05475	Uncharacterized protein. (1626 aa)
	PV08_05637	Uncharacterized protein. (489 aa)
	PV08_04034	Bromo domain-containing protein. (352 aa)
	PV08_04190	AAA domain-containing protein. (1779 aa)
	PV08_04779	WD_REPEATS_REGION domain-containing protein. (726 aa)
	PV08_03248	RING-type domain-containing protein. (290 aa)
	PV08_02114	WD_REPEATS_REGION domain-containing protein. (185 aa)
	PV08_10983	Chromatin modification-related protein. (445 aa)
	PV08_08709	BRCT domain-containing protein. (1374 aa)
	PV08_06591	Chromo domain-containing protein. (186 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00588	PV08_02114	A0A0D2BM88	A0A0D2CDE7	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.498
PV08_00588	PV08_05475	A0A0D2BM88	A0A0D2BVY6	SET domain-containing protein.	Uncharacterized protein.	0.646
PV08_00588	PV08_05700	A0A0D2BM88	A0A0D1YKV6	SET domain-containing protein.	MRG domain-containing protein.	0.464
PV08_00588	PV08_05740	A0A0D2BM88	A0A0D2BAR9	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.498
PV08_00588	PV08_06919	A0A0D2BM88	A0A0D2B5F6	SET domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.649
PV08_00588	PV08_09267	A0A0D2BM88	A0A0D2AZA8	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.	0.748
PV08_00588	PV08_10110	A0A0D2BM88	A0A0D1Y7C0	SET domain-containing protein.	YL1_C domain-containing protein.	0.426
PV08_00588	PV08_10218	A0A0D2BM88	A0A0D2BHR5	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.498
PV08_00588	PV08_10479	A0A0D2BM88	A0A0D2BII5	SET domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.649
PV08_00588	PV08_11209	A0A0D2BM88	A0A0D1ZB46	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.498
PV08_00922	PV08_04190	A0A0D2A6D1	A0A0D2C0A6	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	AAA domain-containing protein.	0.576
PV08_00922	PV08_05637	A0A0D2A6D1	A0A0D2BWF6	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Uncharacterized protein.	0.420
PV08_00922	PV08_05711	A0A0D2A6D1	A0A0D1ZS78	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	CASPASE_P20 domain-containing protein.	0.420
PV08_02114	PV08_00588	A0A0D2CDE7	A0A0D2BM88	WD_REPEATS_REGION domain-containing protein.	SET domain-containing protein.	0.498
PV08_02114	PV08_03917	A0A0D2CDE7	A0A0D2BCM4	WD_REPEATS_REGION domain-containing protein.	PHD domain-containing protein.	0.778
PV08_02114	PV08_05475	A0A0D2CDE7	A0A0D2BVY6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.430
PV08_02114	PV08_06049	A0A0D2CDE7	A0A0D2BAP0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.794
PV08_02114	PV08_06627	A0A0D2CDE7	A0A0D1ZLX7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.636
PV08_02114	PV08_06852	A0A0D2CDE7	A0A0D1YGF4	WD_REPEATS_REGION domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.668
PV08_02114	PV08_06919	A0A0D2CDE7	A0A0D2B5F6	WD_REPEATS_REGION domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.646