61 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_11406	Calcium-binding protein NCS-1. (190 aa)
	PV08_02151	Uncharacterized protein; Belongs to the peptidase M16 family. (567 aa)
	PV08_01956	Uncharacterized protein. (546 aa)
	PV08_01605	Uncharacterized protein. (1227 aa)
	PV08_01449	Uncharacterized protein. (414 aa)
	PV08_03454	WD_REPEATS_REGION domain-containing protein. (611 aa)
	PV08_03180	Uncharacterized protein. (414 aa)
	PV08_04462	Rap-GAP domain-containing protein. (1432 aa)
	PV08_04262	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (357 aa)
	PV08_06282	DBF4-type domain-containing protein. (631 aa)
	PV08_07611	CsbD domain-containing protein. (179 aa)
	PV08_06822	Rab-GAP TBC domain-containing protein. (620 aa)
	PV08_06636	Rab-GAP TBC domain-containing protein. (443 aa)
	PV08_08932	Zn(2)-C6 fungal-type domain-containing protein. (614 aa)
	PV08_10551	PH domain-containing protein. (974 aa)
	PV08_00559	Uncharacterized protein. (855 aa)
	PV08_02898	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	PV08_02747	Uncharacterized protein. (396 aa)
	PV08_04799	Proteasome subunit beta type-3. (192 aa)
	PV08_04638	Rab-GAP TBC domain-containing protein. (893 aa)
	PV08_06533	Uncharacterized protein. (419 aa)
	PV08_07544	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (220 aa)
	PV08_07136	CYCLIN domain-containing protein; Belongs to the cyclin family. (410 aa)
	PV08_06750	Uncharacterized protein. (149 aa)
	PV08_06745	WD_REPEATS_REGION domain-containing protein. (643 aa)
	PV08_01025	Uncharacterized protein. (295 aa)
	PV08_00388	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (457 aa)
	PV08_03522	WD_REPEATS_REGION domain-containing protein. (1434 aa)
	PV08_02907	PPM-type phosphatase domain-containing protein. (630 aa)
	PV08_11423	Rab-GAP TBC domain-containing protein. (855 aa)
	PV08_04925	Rho-GAP domain-containing protein. (661 aa)
	PV08_04669	Proteasome subunit beta. (182 aa)
	PV08_04559	Uncharacterized protein. (2687 aa)
	PV08_11970	Uncharacterized protein. (790 aa)
	PV08_04489	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (505 aa)
	TAH18	NADPH-dependent diflavin oxidoreductase 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of DRE2. Positively controls H(2)O(2)-induced cell death; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (645 aa)
	PV08_06543	Rab-GAP TBC domain-containing protein. (634 aa)
	PV08_05773	Uncharacterized protein. (2462 aa)
	PV08_05616	Rab-GAP TBC domain-containing protein. (385 aa)
	PV08_05305	Uncharacterized protein. (489 aa)
	PV08_07812	RPN13_C domain-containing protein. (393 aa)
	PV08_05223	Uncharacterized protein. (279 aa)
	PV08_07539	Vezatin domain-containing protein. (586 aa)
	PV08_07532	Rho-GAP domain-containing protein. (820 aa)
	PV08_07244	Uncharacterized protein. (707 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_09201	Uncharacterized protein. (774 aa)
	PV08_10841	Uncharacterized protein. (964 aa)
	PV08_11419	Rab-GAP TBC domain-containing protein. (894 aa)
	PV08_11154	WD_REPEATS_REGION domain-containing protein. (580 aa)
	PV08_02142	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (320 aa)
	PV08_01476	Uncharacterized protein. (949 aa)
	PV08_01047	Rab-GAP TBC domain-containing protein. (1117 aa)
	PV08_00962	Uncharacterized protein. (330 aa)
	PV08_00922	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (115 aa)
	PV08_05701	Uncharacterized protein. (280 aa)
	PV08_06683	Protein kinase domain-containing protein. (309 aa)
	PV08_07406	Aldo_ket_red domain-containing protein. (305 aa)
	PV08_08625	Uncharacterized protein. (297 aa)
	PV08_08354	Rab-GAP TBC domain-containing protein. (1038 aa)
	PV08_10306	UDENN FLCN/SMCR8-type domain-containing protein. (516 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00388	PV08_05701	A0A0D2BLI8	A0A0D1ZS71	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation.	Uncharacterized protein.	0.475
PV08_00388	PV08_06750	A0A0D2BLI8	A0A0D2BRX8	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation.	Uncharacterized protein.	0.475
PV08_00559	PV08_03454	A0A0D2C8X0	A0A0D1YV46	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.644
PV08_00559	PV08_06745	A0A0D2C8X0	A0A0D2BRX2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.644
PV08_00559	PV08_11154	A0A0D2C8X0	A0A0D2ATX5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.644
PV08_00922	PV08_03454	A0A0D2A6D1	A0A0D1YV46	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_00922	PV08_04669	A0A0D2A6D1	A0A0D2BFV7	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Proteasome subunit beta.	0.683
PV08_00922	PV08_04799	A0A0D2A6D1	A0A0D2C1S5	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Proteasome subunit beta type-3.	0.675
PV08_00922	PV08_06745	A0A0D2A6D1	A0A0D2BRX2	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_00922	PV08_07539	A0A0D2A6D1	A0A0D2B7U7	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Vezatin domain-containing protein.	0.461
PV08_00922	PV08_07544	A0A0D2A6D1	A0A0D2BU03	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.461
PV08_00922	PV08_11154	A0A0D2A6D1	A0A0D2ATX5	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	WD_REPEATS_REGION domain-containing protein.	0.704
PV08_00962	PV08_02898	A0A0D2A6I5	A0A0D2C4U9	Uncharacterized protein.	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.636
PV08_01025	PV08_02747	A0A0D2BPJ9	A0A0D2C4E5	Uncharacterized protein.	Uncharacterized protein.	0.448
PV08_01025	PV08_05223	A0A0D2BPJ9	A0A0D2B8C8	Uncharacterized protein.	Uncharacterized protein.	0.749
PV08_01025	PV08_06636	A0A0D2BPJ9	A0A0D1YFL4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.606
PV08_01025	PV08_08625	A0A0D2BPJ9	A0A0D1ZKT7	Uncharacterized protein.	Uncharacterized protein.	0.470
PV08_01047	PV08_05616	A0A0D2A6T6	A0A0D2B9G2	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.497
PV08_01047	PV08_06543	A0A0D2A6T6	A0A0D2BBY5	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.408
PV08_01047	PV08_06822	A0A0D2A6T6	A0A0D1YGD1	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.457