52 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_06382	HTH APSES-type domain-containing protein. (766 aa)
	PV08_06432	TFIIE beta domain-containing protein. (231 aa)
	PV08_04111	CBFD_NFYB_HMF domain-containing protein. (296 aa)
	PV08_00225	Acyl_transf_3 domain-containing protein. (372 aa)
	PV08_00941	Uncharacterized protein. (301 aa)
	PV08_01510	BTP domain-containing protein. (233 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_01986	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (113 aa)
	PV08_10291	TAF8_C domain-containing protein. (309 aa)
	PV08_10391	BHLH domain-containing protein. (158 aa)
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_09180	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (241 aa)
	PV08_08139	Uncharacterized protein. (384 aa)
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_07834	CUE domain-containing protein. (674 aa)
	PV08_05927	Uncharacterized protein. (867 aa)
	PV08_05062	Uncharacterized protein. (992 aa)
	PV08_02460	Uncharacterized protein. (768 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_11331	Uncharacterized protein. (800 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_03042	HMG box domain-containing protein. (471 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_00368	TFIID_20kDa domain-containing protein. (572 aa)
	PV08_09353	TAFII28 domain-containing protein. (373 aa)
	PV08_03558	Uncharacterized protein. (376 aa)
	PV08_00122	Uncharacterized protein. (1262 aa)
	PV08_01088	Uncharacterized protein. (970 aa)
	PV08_01898	Uncharacterized protein. (304 aa)
	PV08_01459	BZIP domain-containing protein. (318 aa)
	PV08_08930	TAF domain-containing protein. (450 aa)
	PV08_06900	Uncharacterized protein. (867 aa)
	PV08_06925	Uncharacterized protein. (658 aa)
	PV08_01955	Uncharacterized protein. (755 aa)
	PV08_07811	Acyl_transf_3 domain-containing protein. (499 aa)
	PV08_06110	Uncharacterized protein. (414 aa)
	PV08_04195	CBFD_NFYB_HMF domain-containing protein. (218 aa)
	PV08_01254	Uncharacterized protein. (1756 aa)
	PV08_01461	Uncharacterized protein. (1065 aa)
	PV08_01511	TAFII55_N domain-containing protein. (764 aa)
	PV08_01531	DUF4211 domain-containing protein. (731 aa)
	PV08_01987	Uncharacterized protein. (343 aa)
	PV08_10718	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (697 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_09911	Uncharacterized protein. (271 aa)
	PV08_07242	Uncharacterized protein. (704 aa)
	PV08_07309	DUF3591 domain-containing protein. (1129 aa)
	PV08_05790	Uncharacterized protein. (1190 aa)
	PV08_06284	HTH TFE/IIEalpha-type domain-containing protein. (514 aa)
	PV08_03843	Uncharacterized protein. (217 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00060	PV08_00122	A0A0D2BKM9	A0A0D2BLW3	DNA repair helicase rad15.	Uncharacterized protein.	0.871
PV08_00060	PV08_00225	A0A0D2BKM9	A0A0D1YWH6	DNA repair helicase rad15.	Acyl_transf_3 domain-containing protein.	0.835
PV08_00060	PV08_00368	A0A0D2BKM9	A0A0D2BLG4	DNA repair helicase rad15.	TFIID_20kDa domain-containing protein.	0.871
PV08_00060	PV08_00941	A0A0D2BKM9	A0A0D1YYK2	DNA repair helicase rad15.	Uncharacterized protein.	0.805
PV08_00060	PV08_01088	A0A0D2BKM9	A0A0D2BNQ8	DNA repair helicase rad15.	Uncharacterized protein.	0.475
PV08_00060	PV08_01254	A0A0D2BKM9	A0A0D2A7C7	DNA repair helicase rad15.	Uncharacterized protein.	0.899
PV08_00060	PV08_01461	A0A0D2BKM9	A0A0D2A7W8	DNA repair helicase rad15.	Uncharacterized protein.	0.475
PV08_00060	PV08_01511	A0A0D2BKM9	A0A0D2A829	DNA repair helicase rad15.	TAFII55_N domain-containing protein.	0.858
PV08_00060	PV08_01525	A0A0D2BKM9	A0A0D1Z066	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_01531	A0A0D2BKM9	A0A0D2A854	DNA repair helicase rad15.	DUF4211 domain-containing protein.	0.805
PV08_00060	PV08_01955	A0A0D2BKM9	A0A0D2BSH0	DNA repair helicase rad15.	Uncharacterized protein.	0.475
PV08_00060	PV08_01986	A0A0D2BKM9	A0A0D1Z171	DNA repair helicase rad15.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.944
PV08_00060	PV08_01987	A0A0D2BKM9	A0A0D2A9G3	DNA repair helicase rad15.	Uncharacterized protein.	0.944
PV08_00060	PV08_02372	A0A0D2BKM9	A0A0D2BHK3	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02460	A0A0D2BKM9	A0A0D1ZZM4	DNA repair helicase rad15.	Uncharacterized protein.	0.858
PV08_00060	PV08_02977	A0A0D2BKM9	A0A0D2BI97	DNA repair helicase rad15.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
PV08_00060	PV08_03558	A0A0D2BKM9	A0A0D2C6Q5	DNA repair helicase rad15.	Uncharacterized protein.	0.965
PV08_00060	PV08_03843	A0A0D2BKM9	A0A0D2BDF8	DNA repair helicase rad15.	Uncharacterized protein.	0.868
PV08_00060	PV08_03909	A0A0D2BKM9	A0A0D2BDL9	DNA repair helicase rad15.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.992
PV08_00060	PV08_05062	A0A0D2BKM9	A0A0D1ZYX7	DNA repair helicase rad15.	Uncharacterized protein.	0.475