22 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_05815	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1213 aa)
	PV08_11379	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (437 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_04116	Uncharacterized protein. (327 aa)
	PV08_04513	RNA_pol_L_2 domain-containing protein. (129 aa)
	PV08_00265	DNA-directed RNA polymerase. (193 aa)
	PV08_08555	Uncharacterized protein. (973 aa)
	PV08_00462	Uncharacterized protein. (384 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_11537	Histone H3; Belongs to the histone H3 family. (136 aa)
	PV08_10374	Plus3 domain-containing protein. (611 aa)
	PV08_05248	Uncharacterized protein. (943 aa)
	PV08_05240	Uncharacterized protein. (1067 aa)
	PV08_05391	Uncharacterized protein. (1900 aa)
	PV08_06436	Uncharacterized protein. (541 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_06655	Uncharacterized protein. (1423 aa)
	PV08_01835	Uncharacterized protein. (2890 aa)
	PV08_04516	Histone H3-like centromeric protein cnp1. (151 aa)
	PV08_04593	SWIB domain-containing protein. (285 aa)
	PV08_01074	Uncharacterized protein. (478 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00265	PV08_00705	A0A0D1YWL0	A0A0D2BNM3	DNA-directed RNA polymerase.	Uncharacterized protein.	0.996
PV08_00265	PV08_01074	A0A0D1YWL0	A0A0D2CAC6	DNA-directed RNA polymerase.	Uncharacterized protein.	0.611
PV08_00265	PV08_01835	A0A0D1YWL0	A0A0D2BS43	DNA-directed RNA polymerase.	Uncharacterized protein.	0.601
PV08_00265	PV08_04116	A0A0D1YWL0	A0A0D1YP46	DNA-directed RNA polymerase.	Uncharacterized protein.	0.978
PV08_00265	PV08_04513	A0A0D1YWL0	A0A0D1YQ14	DNA-directed RNA polymerase.	RNA_pol_L_2 domain-containing protein.	0.998
PV08_00265	PV08_05815	A0A0D1YWL0	A0A0D2BAY4	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.955
PV08_00265	PV08_06655	A0A0D1YWL0	A0A0D2BRJ6	DNA-directed RNA polymerase.	Uncharacterized protein.	0.690
PV08_00265	PV08_08398	A0A0D1YWL0	A0A0D1YDS8	DNA-directed RNA polymerase.	Uncharacterized protein.	0.997
PV08_00265	PV08_11001	A0A0D1YWL0	A0A0D2BK91	DNA-directed RNA polymerase.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.996
PV08_00462	PV08_00705	A0A0D2A4Z3	A0A0D2BNM3	Uncharacterized protein.	Uncharacterized protein.	0.622
PV08_00462	PV08_01074	A0A0D2A4Z3	A0A0D2CAC6	Uncharacterized protein.	Uncharacterized protein.	0.864
PV08_00462	PV08_04513	A0A0D2A4Z3	A0A0D1YQ14	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.754
PV08_00462	PV08_04593	A0A0D2A4Z3	A0A0D2C137	Uncharacterized protein.	SWIB domain-containing protein.	0.420
PV08_00462	PV08_05815	A0A0D2A4Z3	A0A0D2BAY4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.852
PV08_00462	PV08_06436	A0A0D2A4Z3	A0A0D2BCN9	Uncharacterized protein.	Uncharacterized protein.	0.538
PV08_00462	PV08_08398	A0A0D2A4Z3	A0A0D1YDS8	Uncharacterized protein.	Uncharacterized protein.	0.656
PV08_00462	PV08_08555	A0A0D2A4Z3	A0A0D1ZKL2	Uncharacterized protein.	Uncharacterized protein.	0.953
PV08_00462	PV08_11001	A0A0D2A4Z3	A0A0D2BK91	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.712
PV08_00612	PV08_00705	A0A0D2A5L2	A0A0D2BNM3	S1 domain-containing protein.	Uncharacterized protein.	0.999
PV08_00612	PV08_04513	A0A0D2A5L2	A0A0D1YQ14	S1 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.476