47 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_09466	Nudix hydrolase domain-containing protein. (458 aa)
	PV08_08836	Uncharacterized protein. (325 aa)
	PV08_07035	Glucosamine-6-phosphate isomerase. (319 aa)
	PV08_06836	Nudix hydrolase domain-containing protein. (158 aa)
	PV08_07157	Uncharacterized protein. (872 aa)
	PV08_07354	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (659 aa)
	PV08_07830	Uncharacterized protein. (624 aa)
	PV08_07895	IU_nuc_hydro domain-containing protein. (365 aa)
	PV08_05210	Uncharacterized protein. (319 aa)
	PV08_05763	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family. (387 aa)
	PV08_06069	IU_nuc_hydro domain-containing protein. (365 aa)
	PV08_06106	Uncharacterized protein. (421 aa)
	PV08_11251	Uncharacterized protein. (335 aa)
	PV08_04749	Uncharacterized protein. (329 aa)
	PV08_04815	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (748 aa)
	PV08_02608	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (1100 aa)
	PV08_03037	IU_nuc_hydro domain-containing protein. (437 aa)
	PV08_03169	Uncharacterized protein. (1019 aa)
	PV08_03554	Nudix hydrolase domain-containing protein. (631 aa)
	PV08_03599	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (548 aa)
	PV08_00052	Uncharacterized protein. (353 aa)
	PV08_00983	Choline-sulfatase. (569 aa)
	PV08_01073	Uncharacterized protein. (718 aa)
	PV08_08026	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (336 aa)
	PV08_01398	NodB homology domain-containing protein. (364 aa)
	PV08_07433	Glucosamine-6-phosphate isomerase. (363 aa)
	PV08_07861	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (396 aa)
	PV08_05869	Uncharacterized protein. (437 aa)
	PV08_06050	Uncharacterized protein. (798 aa)
	PV08_04633	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (430 aa)
	PV08_00919	Uncharacterized protein. (394 aa)
	PV08_01069	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (638 aa)
	PV08_09082	Uncharacterized protein. (649 aa)
	PV08_11479	Uncharacterized protein. (312 aa)
	PV08_08359	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (693 aa)
	PV08_00310	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (172 aa)
	PV08_00179	Amidohydro-rel domain-containing protein. (457 aa)
	PV08_03195	A_deaminase domain-containing protein. (614 aa)
	PV08_02554	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (321 aa)
	PV08_02293	GH16 domain-containing protein. (385 aa)
	PV08_03824	Uncharacterized protein. (435 aa)
	PV08_07838	Uncharacterized protein. (765 aa)
	PV08_07546	Deoxyuridine 5'-triphosphate nucleotidohydrolase. (192 aa)
	PV08_09390	Uncharacterized protein. (502 aa)
	PV08_09305	Uncharacterized protein. (850 aa)
	PV08_11630	IU_nuc_hydro domain-containing protein. (355 aa)
	PV08_11997	Uncharacterized protein. (133 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00052	PV08_08026	A0A0D2BLP4	A0A0D2BNZ8	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.594
PV08_00052	PV08_08836	A0A0D2BLP4	A0A0D2B4M4	Uncharacterized protein.	Uncharacterized protein.	0.600
PV08_00179	PV08_07035	A0A0D1YWE7	A0A0D2B5P0	Amidohydro-rel domain-containing protein.	Glucosamine-6-phosphate isomerase.	0.967
PV08_00179	PV08_07433	A0A0D1YWE7	A0A0D2BTS5	Amidohydro-rel domain-containing protein.	Glucosamine-6-phosphate isomerase.	0.967
PV08_00310	PV08_01069	A0A0D1YWQ2	A0A0D2CAB1	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.775
PV08_00310	PV08_03037	A0A0D1YWQ2	A0A0D2BIH1	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	IU_nuc_hydro domain-containing protein.	0.726
PV08_00310	PV08_03554	A0A0D1YWQ2	A0A0D2BKX9	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Nudix hydrolase domain-containing protein.	0.764
PV08_00310	PV08_06050	A0A0D1YWQ2	A0A0D2BXM0	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Uncharacterized protein.	0.797
PV08_00310	PV08_06069	A0A0D1YWQ2	A0A0D2BAQ8	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	IU_nuc_hydro domain-containing protein.	0.797
PV08_00310	PV08_06106	A0A0D1YWQ2	A0A0D2BBT0	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Uncharacterized protein.	0.726
PV08_00310	PV08_06836	A0A0D1YWQ2	A0A0D2B5W9	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Nudix hydrolase domain-containing protein.	0.480
PV08_00310	PV08_07895	A0A0D1YWQ2	A0A0D2B882	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	IU_nuc_hydro domain-containing protein.	0.726
PV08_00310	PV08_09466	A0A0D1YWQ2	A0A0D2B0D9	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Nudix hydrolase domain-containing protein.	0.480
PV08_00310	PV08_11630	A0A0D1YWQ2	A0A0D1Y702	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	IU_nuc_hydro domain-containing protein.	0.726
PV08_00983	PV08_09082	A0A0D2BN88	A0A0D2AZB7	Choline-sulfatase.	Uncharacterized protein.	0.869
PV08_01069	PV08_00310	A0A0D2CAB1	A0A0D1YWQ2	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.775
PV08_01069	PV08_03037	A0A0D2CAB1	A0A0D2BIH1	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	IU_nuc_hydro domain-containing protein.	0.542
PV08_01069	PV08_03195	A0A0D2CAB1	A0A0D1YUH3	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	A_deaminase domain-containing protein.	0.790
PV08_01069	PV08_03554	A0A0D2CAB1	A0A0D2BKX9	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Nudix hydrolase domain-containing protein.	0.704
PV08_01069	PV08_06050	A0A0D2CAB1	A0A0D2BXM0	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Uncharacterized protein.	0.690