12 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10124	DRIM domain-containing protein. (2590 aa)
	PV08_00879	Uncharacterized protein. (513 aa)
	PV08_01815	RIO domain-containing protein. (382 aa)
	PV08_04617	Uncharacterized protein. (189 aa)
	PV08_05288	Uncharacterized protein. (335 aa)
	PV08_06741	Bms1-type G domain-containing protein. (811 aa)
	PV08_08317	Uncharacterized protein. (262 aa)
	PV08_10262	Uncharacterized protein. (713 aa)
	PV08_11366	RRM domain-containing protein. (660 aa)
	PV08_04136	Uncharacterized protein. (900 aa)
	PV08_03935	Uncharacterized protein. (471 aa)
	PV08_06657	CBF domain-containing protein. (287 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00879	PV08_01815	A0A0D2C9P3	A0A0D2BS26	Uncharacterized protein.	RIO domain-containing protein.	0.994
PV08_00879	PV08_03935	A0A0D2C9P3	A0A0D1YNQ8	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_00879	PV08_04136	A0A0D2C9P3	A0A0D1YP66	Uncharacterized protein.	Uncharacterized protein.	0.998
PV08_00879	PV08_05288	A0A0D2C9P3	A0A0D2B8H3	Uncharacterized protein.	Uncharacterized protein.	0.494
PV08_00879	PV08_06657	A0A0D2C9P3	A0A0D1YFP1	Uncharacterized protein.	CBF domain-containing protein.	0.997
PV08_00879	PV08_06741	A0A0D2C9P3	A0A0D2B5K1	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
PV08_00879	PV08_08317	A0A0D2C9P3	A0A0D2B3C6	Uncharacterized protein.	Uncharacterized protein.	0.857
PV08_00879	PV08_10124	A0A0D2C9P3	A0A0D2AWF4	Uncharacterized protein.	DRIM domain-containing protein.	0.993
PV08_00879	PV08_10262	A0A0D2C9P3	A0A0D2AW59	Uncharacterized protein.	Uncharacterized protein.	0.946
PV08_00879	PV08_11366	A0A0D2C9P3	A0A0D2AUK0	Uncharacterized protein.	RRM domain-containing protein.	0.904
PV08_01815	PV08_00879	A0A0D2BS26	A0A0D2C9P3	RIO domain-containing protein.	Uncharacterized protein.	0.994
PV08_01815	PV08_03935	A0A0D2BS26	A0A0D1YNQ8	RIO domain-containing protein.	Uncharacterized protein.	0.999
PV08_01815	PV08_04136	A0A0D2BS26	A0A0D1YP66	RIO domain-containing protein.	Uncharacterized protein.	0.763
PV08_01815	PV08_06657	A0A0D2BS26	A0A0D1YFP1	RIO domain-containing protein.	CBF domain-containing protein.	0.674
PV08_01815	PV08_06741	A0A0D2BS26	A0A0D2B5K1	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.997
PV08_01815	PV08_08317	A0A0D2BS26	A0A0D2B3C6	RIO domain-containing protein.	Uncharacterized protein.	0.595
PV08_01815	PV08_10262	A0A0D2BS26	A0A0D2AW59	RIO domain-containing protein.	Uncharacterized protein.	0.428
PV08_01815	PV08_11366	A0A0D2BS26	A0A0D2AUK0	RIO domain-containing protein.	RRM domain-containing protein.	0.644
PV08_03935	PV08_00879	A0A0D1YNQ8	A0A0D2C9P3	Uncharacterized protein.	Uncharacterized protein.	0.999
PV08_03935	PV08_01815	A0A0D1YNQ8	A0A0D2BS26	Uncharacterized protein.	RIO domain-containing protein.	0.999