12 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_02597	Uncharacterized protein. (624 aa)
	PV08_11630	IU_nuc_hydro domain-containing protein. (355 aa)
	PV08_11290	Uncharacterized protein. (432 aa)
	PV08_10663	Uncharacterized protein. (410 aa)
	PV08_09541	Uncharacterized protein. (964 aa)
	PV08_08330	Uncharacterized protein. (383 aa)
	PV08_07895	IU_nuc_hydro domain-containing protein. (365 aa)
	PV08_06069	IU_nuc_hydro domain-containing protein. (365 aa)
	PV08_06106	Uncharacterized protein. (421 aa)
	PV08_03037	IU_nuc_hydro domain-containing protein. (437 aa)
	PV08_07413	Uncharacterized protein. (428 aa)
	PV08_06050	Uncharacterized protein. (798 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_02597	PV08_08330	A0A0D2C3T9	A0A0D2B2K1	Uncharacterized protein.	Uncharacterized protein.	0.808
PV08_02597	PV08_10663	A0A0D2C3T9	A0A0D2AXB2	Uncharacterized protein.	Uncharacterized protein.	0.943
PV08_02597	PV08_11290	A0A0D2C3T9	A0A0D2AUA7	Uncharacterized protein.	Uncharacterized protein.	0.801
PV08_07413	PV08_08330	A0A0D2BTR1	A0A0D2B2K1	Uncharacterized protein.	Uncharacterized protein.	0.631
PV08_07413	PV08_10663	A0A0D2BTR1	A0A0D2AXB2	Uncharacterized protein.	Uncharacterized protein.	0.803
PV08_07413	PV08_11290	A0A0D2BTR1	A0A0D2AUA7	Uncharacterized protein.	Uncharacterized protein.	0.573
PV08_08330	PV08_02597	A0A0D2B2K1	A0A0D2C3T9	Uncharacterized protein.	Uncharacterized protein.	0.808
PV08_08330	PV08_07413	A0A0D2B2K1	A0A0D2BTR1	Uncharacterized protein.	Uncharacterized protein.	0.631
PV08_08330	PV08_10663	A0A0D2B2K1	A0A0D2AXB2	Uncharacterized protein.	Uncharacterized protein.	0.874
PV08_08330	PV08_11290	A0A0D2B2K1	A0A0D2AUA7	Uncharacterized protein.	Uncharacterized protein.	0.823
PV08_10663	PV08_02597	A0A0D2AXB2	A0A0D2C3T9	Uncharacterized protein.	Uncharacterized protein.	0.943
PV08_10663	PV08_07413	A0A0D2AXB2	A0A0D2BTR1	Uncharacterized protein.	Uncharacterized protein.	0.803
PV08_10663	PV08_08330	A0A0D2AXB2	A0A0D2B2K1	Uncharacterized protein.	Uncharacterized protein.	0.874
PV08_10663	PV08_11290	A0A0D2AXB2	A0A0D2AUA7	Uncharacterized protein.	Uncharacterized protein.	0.952
PV08_11290	PV08_02597	A0A0D2AUA7	A0A0D2C3T9	Uncharacterized protein.	Uncharacterized protein.	0.801
PV08_11290	PV08_07413	A0A0D2AUA7	A0A0D2BTR1	Uncharacterized protein.	Uncharacterized protein.	0.573
PV08_11290	PV08_08330	A0A0D2AUA7	A0A0D2B2K1	Uncharacterized protein.	Uncharacterized protein.	0.823
PV08_11290	PV08_10663	A0A0D2AUA7	A0A0D2AXB2	Uncharacterized protein.	Uncharacterized protein.	0.952