(65 nodes) AMP-dependent synthetase/ligase domain network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10064	Uncharacterized protein. (1895 aa)
	PV08_04574	AMP-binding domain-containing protein. (630 aa)
	PV08_09022	Acetoacetate-CoA ligase. (697 aa)
	PV08_09299	AMP-binding domain-containing protein. (549 aa)
	PV08_09650	Uncharacterized protein. (647 aa)
	PV08_04291	Uncharacterized protein. (4881 aa)
	PV08_11955	Uncharacterized protein. (596 aa)
	PV08_04181	Acetoacetate-CoA ligase. (683 aa)
	PV08_12013	Uncharacterized protein. (551 aa)
	PV08_12042	Uncharacterized protein. (551 aa)
	PV08_12061	Uncharacterized protein. (551 aa)
	PV08_06356	Uncharacterized protein. (617 aa)
	PV08_06076	Uncharacterized protein. (546 aa)
	PV08_06465	Uncharacterized protein. (1075 aa)
	PV08_06084	AMP-binding domain-containing protein. (648 aa)
	PV08_05651	Uncharacterized protein. (545 aa)
	PV08_08210	Carrier domain-containing protein. (1063 aa)
	PV08_07936	Uncharacterized protein. (600 aa)
	PV08_08085	Uncharacterized protein. (573 aa)
	PV08_11573	Uncharacterized protein. (573 aa)
	PV08_09430	Acetoacetate-CoA ligase. (677 aa)
	PV08_09675	Uncharacterized protein. (565 aa)
	PV08_03679	Acetoacetate-CoA ligase. (669 aa)
	PV08_00999	Uncharacterized protein. (563 aa)
	PV08_08763	Carrier domain-containing protein. (1217 aa)
	PV08_08810	Uncharacterized protein. (569 aa)
	PV08_02213	Uncharacterized protein. (2089 aa)
	PV08_02090	Uncharacterized protein. (304 aa)
	PV08_05769	Acetyl-coenzyme A synthetase. (670 aa)
	PV08_04526	Uncharacterized protein. (579 aa)
	PV08_04613	Uncharacterized protein. (545 aa)
	PV08_11232	Uncharacterized protein. (697 aa)
	PV08_11569	Uncharacterized protein. (564 aa)
	PV08_05695	L-aminoadipate-semialdehyde dehydrogenase. (1409 aa)
	PV08_06327	Uncharacterized protein. (598 aa)
	PV08_05151	Carrier domain-containing protein. (1048 aa)
	PV08_02654	Uncharacterized protein. (578 aa)
	PV08_08694	AMP-binding domain-containing protein. (716 aa)
	PV08_08218	AMP-binding domain-containing protein. (328 aa)
	PV08_08013	Uncharacterized protein. (633 aa)
	PV08_09989	Uncharacterized protein. (1091 aa)
	PV08_09487	Acetoacetate-CoA ligase. (699 aa)
	PV08_11665	AMP-binding domain-containing protein. (746 aa)
	PV08_10915	Uncharacterized protein. (546 aa)
	PV08_11774	AMP-binding domain-containing protein. (702 aa)
	PV08_11989	Uncharacterized protein. (1421 aa)
	PV08_02212	Uncharacterized protein. (573 aa)
	PV08_01646	Uncharacterized protein. (556 aa)
	PV08_03046	Uncharacterized protein. (516 aa)
	PV08_04158	Uncharacterized protein. (568 aa)
	PV08_05817	AMP-binding domain-containing protein. (552 aa)
	PV08_05488	Ig-like domain-containing protein. (1976 aa)
	PV08_06748	Uncharacterized protein. (668 aa)
	PV08_08480	Uncharacterized protein. (559 aa)
	PV08_09664	Uncharacterized protein. (581 aa)
	PV08_01976	Acetoacetate-CoA ligase. (694 aa)
	PV08_00956	Uncharacterized protein. (629 aa)
	PV08_00376	Uncharacterized protein. (564 aa)
	PV08_03505	Uncharacterized protein. (801 aa)
	PV08_02406	PKS_PP domain-containing protein. (1197 aa)
	PV08_02711	Uncharacterized protein. (563 aa)
	PV08_10604	Uncharacterized protein. (560 aa)
	PV08_09756	Uncharacterized protein. (578 aa)
	PV08_08411	Carrier domain-containing protein. (1280 aa)
	PV08_08441	Uncharacterized protein. (594 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00376	PV08_01976	A0A0D1YWV9	A0A0D1Z160	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_02213	A0A0D1YWV9	A0A0D2BRE2	Uncharacterized protein.	Uncharacterized protein.	0.499
PV08_00376	PV08_02406	A0A0D1YWV9	A0A0D2BGK2	Uncharacterized protein.	PKS_PP domain-containing protein.	0.499
PV08_00376	PV08_03679	A0A0D1YWV9	A0A0D2C741	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_04181	A0A0D1YWV9	A0A0D2BEJ4	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_04291	A0A0D1YWV9	A0A0D2BES1	Uncharacterized protein.	Uncharacterized protein.	0.505
PV08_00376	PV08_05151	A0A0D1YWV9	A0A0D1YRU8	Uncharacterized protein.	Carrier domain-containing protein.	0.499
PV08_00376	PV08_05695	A0A0D1YWV9	A0A0D1YKV2	Uncharacterized protein.	L-aminoadipate-semialdehyde dehydrogenase.	0.499
PV08_00376	PV08_05769	A0A0D1YWV9	A0A0D2BWQ0	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.500
PV08_00376	PV08_05817	A0A0D1YWV9	A0A0D1ZSG0	Uncharacterized protein.	AMP-binding domain-containing protein.	0.473
PV08_00376	PV08_06465	A0A0D1YWV9	A0A0D2BBM4	Uncharacterized protein.	Uncharacterized protein.	0.499
PV08_00376	PV08_08210	A0A0D1YWV9	A0A0D2B2C7	Uncharacterized protein.	Carrier domain-containing protein.	0.499
PV08_00376	PV08_08411	A0A0D1YWV9	A0A0D2BQ13	Uncharacterized protein.	Carrier domain-containing protein.	0.499
PV08_00376	PV08_08694	A0A0D1YWV9	A0A0D1YEN6	Uncharacterized protein.	AMP-binding domain-containing protein.	0.411
PV08_00376	PV08_08763	A0A0D1YWV9	A0A0D2BQX8	Uncharacterized protein.	Carrier domain-containing protein.	0.499
PV08_00376	PV08_09022	A0A0D1YWV9	A0A0D2AZ52	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_09299	A0A0D1YWV9	A0A0D2B031	Uncharacterized protein.	AMP-binding domain-containing protein.	0.408
PV08_00376	PV08_09430	A0A0D1YWV9	A0A0D2B0B7	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_09487	A0A0D1YWV9	A0A0D1YBA5	Uncharacterized protein.	Acetoacetate-CoA ligase.	0.473
PV08_00376	PV08_09989	A0A0D1YWV9	A0A0D1YCP7	Uncharacterized protein.	Uncharacterized protein.	0.499