(10 nodes) Enoyl-CoA hydratase, C-terminal network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_09406	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (292 aa)
	PV08_03418	Uncharacterized protein. (292 aa)
	PV08_10884	Uncharacterized protein. (392 aa)
	PV08_09871	Uncharacterized protein. (316 aa)
	PV08_03863	Uncharacterized protein. (291 aa)
	PV08_10183	Uncharacterized protein. (286 aa)
	PV08_02934	Uncharacterized protein. (324 aa)
	PV08_02215	Uncharacterized protein. (272 aa)
	PV08_03578	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (310 aa)
	PV08_01719	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (282 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_01719	PV08_03418	A0A0D2CCC2	A0A0D1YV20	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.708
PV08_01719	PV08_10183	A0A0D2CCC2	A0A0D2BHN4	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.660
PV08_02215	PV08_03418	A0A0D2BT99	A0A0D1YV20	Uncharacterized protein.	Uncharacterized protein.	0.520
PV08_02215	PV08_10183	A0A0D2BT99	A0A0D2BHN4	Uncharacterized protein.	Uncharacterized protein.	0.658
PV08_02934	PV08_03418	A0A0D2BJ85	A0A0D1YV20	Uncharacterized protein.	Uncharacterized protein.	0.417
PV08_02934	PV08_10183	A0A0D2BJ85	A0A0D2BHN4	Uncharacterized protein.	Uncharacterized protein.	0.643
PV08_03418	PV08_01719	A0A0D1YV20	A0A0D2CCC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.708
PV08_03418	PV08_02215	A0A0D1YV20	A0A0D2BT99	Uncharacterized protein.	Uncharacterized protein.	0.520
PV08_03418	PV08_02934	A0A0D1YV20	A0A0D2BJ85	Uncharacterized protein.	Uncharacterized protein.	0.417
PV08_03418	PV08_03578	A0A0D1YV20	A0A0D2C6S6	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.424
PV08_03418	PV08_03863	A0A0D1YV20	A0A0D2BDH4	Uncharacterized protein.	Uncharacterized protein.	0.706
PV08_03418	PV08_09406	A0A0D1YV20	A0A0D1YB40	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.523
PV08_03418	PV08_09871	A0A0D1YV20	A0A0D2B118	Uncharacterized protein.	Uncharacterized protein.	0.504
PV08_03418	PV08_10183	A0A0D1YV20	A0A0D2BHN4	Uncharacterized protein.	Uncharacterized protein.	0.936
PV08_03418	PV08_10884	A0A0D1YV20	A0A0D2AY08	Uncharacterized protein.	Uncharacterized protein.	0.656
PV08_03578	PV08_03418	A0A0D2C6S6	A0A0D1YV20	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.424
PV08_03578	PV08_03863	A0A0D2C6S6	A0A0D2BDH4	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.417
PV08_03863	PV08_03418	A0A0D2BDH4	A0A0D1YV20	Uncharacterized protein.	Uncharacterized protein.	0.706
PV08_03863	PV08_03578	A0A0D2BDH4	A0A0D2C6S6	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.417
PV08_03863	PV08_10183	A0A0D2BDH4	A0A0D2BHN4	Uncharacterized protein.	Uncharacterized protein.	0.668