(40 nodes) AMP-binding enzyme, C-terminal domain network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_00956	Uncharacterized protein. (629 aa)
	PV08_09664	Uncharacterized protein. (581 aa)
	PV08_08480	Uncharacterized protein. (559 aa)
	PV08_06748	Uncharacterized protein. (668 aa)
	PV08_04158	Uncharacterized protein. (568 aa)
	PV08_03046	Uncharacterized protein. (516 aa)
	PV08_01646	Uncharacterized protein. (556 aa)
	PV08_05695	L-aminoadipate-semialdehyde dehydrogenase. (1409 aa)
	PV08_02090	Uncharacterized protein. (304 aa)
	PV08_08810	Uncharacterized protein. (569 aa)
	PV08_08441	Uncharacterized protein. (594 aa)
	PV08_09756	Uncharacterized protein. (578 aa)
	PV08_10604	Uncharacterized protein. (560 aa)
	PV08_02711	Uncharacterized protein. (563 aa)
	PV08_11573	Uncharacterized protein. (573 aa)
	PV08_04291	Uncharacterized protein. (4881 aa)
	PV08_11955	Uncharacterized protein. (596 aa)
	PV08_12013	Uncharacterized protein. (551 aa)
	PV08_00999	Uncharacterized protein. (563 aa)
	PV08_04613	Uncharacterized protein. (545 aa)
	PV08_04526	Uncharacterized protein. (579 aa)
	PV08_05769	Acetyl-coenzyme A synthetase. (670 aa)
	PV08_06327	Uncharacterized protein. (598 aa)
	PV08_02654	Uncharacterized protein. (578 aa)
	PV08_03505	Uncharacterized protein. (801 aa)
	PV08_00376	Uncharacterized protein. (564 aa)
	PV08_12042	Uncharacterized protein. (551 aa)
	PV08_12061	Uncharacterized protein. (551 aa)
	PV08_06356	Uncharacterized protein. (617 aa)
	PV08_06076	Uncharacterized protein. (546 aa)
	PV08_05651	Uncharacterized protein. (545 aa)
	PV08_07936	Uncharacterized protein. (600 aa)
	PV08_08085	Uncharacterized protein. (573 aa)
	PV08_09675	Uncharacterized protein. (565 aa)
	PV08_09650	Uncharacterized protein. (647 aa)
	PV08_10915	Uncharacterized protein. (546 aa)
	PV08_11569	Uncharacterized protein. (564 aa)
	PV08_11232	Uncharacterized protein. (697 aa)
	PV08_02212	Uncharacterized protein. (573 aa)
	PV08_08013	Uncharacterized protein. (633 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00376	PV08_04291	A0A0D1YWV9	A0A0D2BES1	Uncharacterized protein.	Uncharacterized protein.	0.505
PV08_00376	PV08_05695	A0A0D1YWV9	A0A0D1YKV2	Uncharacterized protein.	L-aminoadipate-semialdehyde dehydrogenase.	0.499
PV08_00376	PV08_05769	A0A0D1YWV9	A0A0D2BWQ0	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.500
PV08_00376	PV08_11232	A0A0D1YWV9	A0A0D2AUT1	Uncharacterized protein.	Uncharacterized protein.	0.473
PV08_00376	PV08_11569	A0A0D1YWV9	A0A0D2AVY5	Uncharacterized protein.	Uncharacterized protein.	0.521
PV08_00376	PV08_11955	A0A0D1YWV9	A0A0D2BEP3	Uncharacterized protein.	Uncharacterized protein.	0.473
PV08_00956	PV08_04291	A0A0D1YYL7	A0A0D2BES1	Uncharacterized protein.	Uncharacterized protein.	0.499
PV08_00956	PV08_05695	A0A0D1YYL7	A0A0D1YKV2	Uncharacterized protein.	L-aminoadipate-semialdehyde dehydrogenase.	0.516
PV08_00956	PV08_05769	A0A0D1YYL7	A0A0D2BWQ0	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.490
PV08_00956	PV08_11232	A0A0D1YYL7	A0A0D2AUT1	Uncharacterized protein.	Uncharacterized protein.	0.490
PV08_00956	PV08_11955	A0A0D1YYL7	A0A0D2BEP3	Uncharacterized protein.	Uncharacterized protein.	0.563
PV08_00999	PV08_04291	A0A0D2CA35	A0A0D2BES1	Uncharacterized protein.	Uncharacterized protein.	0.505
PV08_00999	PV08_05695	A0A0D2CA35	A0A0D1YKV2	Uncharacterized protein.	L-aminoadipate-semialdehyde dehydrogenase.	0.499
PV08_00999	PV08_05769	A0A0D2CA35	A0A0D2BWQ0	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.473
PV08_00999	PV08_11232	A0A0D2CA35	A0A0D2AUT1	Uncharacterized protein.	Uncharacterized protein.	0.473
PV08_00999	PV08_11955	A0A0D2CA35	A0A0D2BEP3	Uncharacterized protein.	Uncharacterized protein.	0.473
PV08_01646	PV08_04291	A0A0D2A8I0	A0A0D2BES1	Uncharacterized protein.	Uncharacterized protein.	0.505
PV08_01646	PV08_05651	A0A0D2A8I0	A0A0D2B9I2	Uncharacterized protein.	Uncharacterized protein.	0.448
PV08_01646	PV08_05695	A0A0D2A8I0	A0A0D1YKV2	Uncharacterized protein.	L-aminoadipate-semialdehyde dehydrogenase.	0.499
PV08_01646	PV08_05769	A0A0D2A8I0	A0A0D2BWQ0	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.473