38 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_04603	F-box domain-containing protein. (508 aa)
	PV08_03999	F-box domain-containing protein. (383 aa)
	PV08_06009	Uncharacterized protein. (679 aa)
	PV08_07756	F-box domain-containing protein. (614 aa)
	PV08_07263	Uncharacterized protein. (942 aa)
	PV08_01308	Uncharacterized protein. (744 aa)
	PV08_01227	F-box domain-containing protein. (540 aa)
	PV08_03700	F-box domain-containing protein. (562 aa)
	PV08_03544	Uncharacterized protein. (946 aa)
	PV08_04642	F-box domain-containing protein. (918 aa)
	PV08_04194	F-box domain-containing protein. (1351 aa)
	PV08_06276	F-box domain-containing protein. (301 aa)
	PV08_07563	Uncharacterized protein. (1082 aa)
	PV08_07422	F-box domain-containing protein. (443 aa)
	PV08_08440	F-box domain-containing protein. (959 aa)
	PV08_08027	F-box domain-containing protein. (1095 aa)
	PV08_08065	F-box domain-containing protein. (508 aa)
	PV08_10638	F-box domain-containing protein. (482 aa)
	PV08_10578	F-box domain-containing protein. (570 aa)
	PV08_02172	F-box domain-containing protein. (597 aa)
	PV08_03181	F-box domain-containing protein. (561 aa)
	PV08_02926	F-box domain-containing protein. (1204 aa)
	PV08_04303	Uncharacterized protein. (543 aa)
	PV08_06393	F-box domain-containing protein. (602 aa)
	PV08_07652	Uncharacterized protein. (678 aa)
	PV08_10266	Uncharacterized protein. (1078 aa)
	PV08_03610	F-box domain-containing protein. (369 aa)
	PV08_03331	F-box domain-containing protein. (634 aa)
	PV08_05041	Uncharacterized protein. (326 aa)
	PV08_04901	Uncharacterized protein. (545 aa)
	PV08_06546	F-box domain-containing protein. (740 aa)
	PV08_06458	F-box domain-containing protein. (677 aa)
	PV08_05644	F-box domain-containing protein. (553 aa)
	PV08_08807	F-box domain-containing protein. (525 aa)
	PV08_09275	F-box domain-containing protein. (710 aa)
	PV08_05340	Uncharacterized protein. (712 aa)
	PV08_00202	Uncharacterized protein. (490 aa)
	PV08_02832	F-box domain-containing protein. (480 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_02172	PV08_06393	A0A0D2AA16	A0A0D1ZU75	F-box domain-containing protein.	F-box domain-containing protein.	0.420
PV08_02926	PV08_06458	A0A0D2A0Y6	A0A0D1YMY4	F-box domain-containing protein.	F-box domain-containing protein.	0.455
PV08_03544	PV08_05340	A0A0D2BKX0	A0A0D2B9H2	Uncharacterized protein.	Uncharacterized protein.	0.597
PV08_03544	PV08_06009	A0A0D2BKX0	A0A0D2BXF3	Uncharacterized protein.	Uncharacterized protein.	0.696
PV08_03544	PV08_07263	A0A0D2BKX0	A0A0D2BTB9	Uncharacterized protein.	Uncharacterized protein.	0.597
PV08_03544	PV08_07563	A0A0D2BKX0	A0A0D2B766	Uncharacterized protein.	Uncharacterized protein.	0.696
PV08_03544	PV08_07652	A0A0D2BKX0	A0A0D1ZPX1	Uncharacterized protein.	Uncharacterized protein.	0.757
PV08_05340	PV08_03544	A0A0D2B9H2	A0A0D2BKX0	Uncharacterized protein.	Uncharacterized protein.	0.597
PV08_05340	PV08_06009	A0A0D2B9H2	A0A0D2BXF3	Uncharacterized protein.	Uncharacterized protein.	0.795
PV08_05340	PV08_07563	A0A0D2B9H2	A0A0D2B766	Uncharacterized protein.	Uncharacterized protein.	0.799
PV08_05340	PV08_07652	A0A0D2B9H2	A0A0D1ZPX1	Uncharacterized protein.	Uncharacterized protein.	0.784
PV08_05340	PV08_08027	A0A0D2B9H2	A0A0D2B2K2	Uncharacterized protein.	F-box domain-containing protein.	0.511
PV08_05340	PV08_08440	A0A0D2B9H2	A0A0D2B2U3	Uncharacterized protein.	F-box domain-containing protein.	0.691
PV08_05340	PV08_08807	A0A0D2B9H2	A0A0D1YEX8	Uncharacterized protein.	F-box domain-containing protein.	0.511
PV08_06009	PV08_03544	A0A0D2BXF3	A0A0D2BKX0	Uncharacterized protein.	Uncharacterized protein.	0.696
PV08_06009	PV08_05340	A0A0D2BXF3	A0A0D2B9H2	Uncharacterized protein.	Uncharacterized protein.	0.795
PV08_06009	PV08_07263	A0A0D2BXF3	A0A0D2BTB9	Uncharacterized protein.	Uncharacterized protein.	0.788
PV08_06009	PV08_07563	A0A0D2BXF3	A0A0D2B766	Uncharacterized protein.	Uncharacterized protein.	0.761
PV08_06009	PV08_07652	A0A0D2BXF3	A0A0D1ZPX1	Uncharacterized protein.	Uncharacterized protein.	0.798
PV08_06009	PV08_08440	A0A0D2BXF3	A0A0D2B2U3	Uncharacterized protein.	F-box domain-containing protein.	0.817