STRINGSTRING
PV08_00613 PV08_00613 PV08_09592 PV08_09592 PV08_09645 PV08_09645 PV08_09062 PV08_09062 PV08_09080 PV08_09080 PV08_11207 PV08_11207 PV08_01340 PV08_01340 PV08_00612 PV08_00612 PV08_03302 PV08_03302 PV08_07627 PV08_07627 PV08_06873 PV08_06873 PV08_08159 PV08_08159 PV08_08139 PV08_08139 PV08_09759 PV08_09759 PV08_08398 PV08_08398 PV08_00060 PV08_00060 PV08_11001 PV08_11001 PV08_02977 PV08_02977 PV08_02372 PV08_02372 PV08_03909 PV08_03909 PV08_07727 PV08_07727 PV08_07242 PV08_07242 PV08_00518 PV08_00518 PV08_09898 PV08_09898 PV08_00705 PV08_00705 PV08_04400 PV08_04400 PV08_03341 PV08_03341 PV08_01525 PV08_01525 PV08_09699 PV08_09699 PV08_10537 PV08_10537
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV08_00613Uncharacterized protein. (529 aa)
PV08_09592RING-type domain-containing protein. (265 aa)
PV08_09645Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
PV08_09062RPOLD domain-containing protein. (334 aa)
PV08_09080DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
PV08_11207Uncharacterized protein. (842 aa)
PV08_01340RNA_pol_L_2 domain-containing protein. (243 aa)
PV08_00612S1 domain-containing protein. (167 aa)
PV08_03302DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
PV08_07627Nuclear cap-binding protein subunit 2. (180 aa)
PV08_06873BSD domain-containing protein. (630 aa)
PV08_08159Uncharacterized protein. (420 aa)
PV08_08139Uncharacterized protein. (384 aa)
PV08_09759Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (117 aa)
PV08_08398Uncharacterized protein. (74 aa)
PV08_00060DNA repair helicase rad15. (816 aa)
PV08_11001DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
PV08_02977General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
PV08_02372Uncharacterized protein. (843 aa)
PV08_03909CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
PV08_07727RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (855 aa)
PV08_07242Uncharacterized protein. (704 aa)
PV08_00518RPOL4c domain-containing protein. (152 aa)
PV08_09898Uncharacterized protein. (238 aa)
PV08_00705Uncharacterized protein. (152 aa)
PV08_04400CFEM domain-containing protein. (275 aa)
PV08_03341DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
PV08_01525Uncharacterized protein. (505 aa)
PV08_09699Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1089 aa)
PV08_10537RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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