9 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_04098	Fork-head domain-containing protein. (721 aa)
	PV08_08709	BRCT domain-containing protein. (1374 aa)
	PV08_08114	BHLH domain-containing protein. (535 aa)
	PV08_02911	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	PV08_00487	UBIQUITIN_CONJUGAT_2 domain-containing protein. (667 aa)
	PV08_11260	Uncharacterized protein. (517 aa)
	PV08_08105	Ubiquitin-like domain-containing protein. (101 aa)
	PV08_05339	Uncharacterized protein. (770 aa)
	PV08_10474	SP-RING-type domain-containing protein. (877 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00487	PV08_04098	A0A0D2A536	A0A0D2BD73	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Fork-head domain-containing protein.	0.472
PV08_00487	PV08_05339	A0A0D2A536	A0A0D2BVH9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.472
PV08_00487	PV08_08105	A0A0D2A536	A0A0D2B1Z0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.974
PV08_00487	PV08_08114	A0A0D2A536	A0A0D1ZJB0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	BHLH domain-containing protein.	0.669
PV08_00487	PV08_08709	A0A0D2A536	A0A0D1YEQ1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	BRCT domain-containing protein.	0.760
PV08_00487	PV08_10474	A0A0D2A536	A0A0D2BII2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SP-RING-type domain-containing protein.	0.922
PV08_00487	PV08_11260	A0A0D2A536	A0A0D2AU72	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.922
PV08_02911	PV08_04098	A0A0D2A0X4	A0A0D2BD73	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	Fork-head domain-containing protein.	0.472
PV08_02911	PV08_05339	A0A0D2A0X4	A0A0D2BVH9	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.737
PV08_02911	PV08_08105	A0A0D2A0X4	A0A0D2B1Z0	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.999
PV08_02911	PV08_08114	A0A0D2A0X4	A0A0D1ZJB0	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	BHLH domain-containing protein.	0.669
PV08_02911	PV08_08709	A0A0D2A0X4	A0A0D1YEQ1	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	BRCT domain-containing protein.	0.797
PV08_02911	PV08_10474	A0A0D2A0X4	A0A0D2BII2	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	SP-RING-type domain-containing protein.	0.967
PV08_02911	PV08_11260	A0A0D2A0X4	A0A0D2AU72	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.974
PV08_04098	PV08_00487	A0A0D2BD73	A0A0D2A536	Fork-head domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.472
PV08_04098	PV08_02911	A0A0D2BD73	A0A0D2A0X4	Fork-head domain-containing protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.472
PV08_04098	PV08_05339	A0A0D2BD73	A0A0D2BVH9	Fork-head domain-containing protein.	Uncharacterized protein.	0.897
PV08_04098	PV08_08105	A0A0D2BD73	A0A0D2B1Z0	Fork-head domain-containing protein.	Ubiquitin-like domain-containing protein.	0.481
PV08_05339	PV08_00487	A0A0D2BVH9	A0A0D2A536	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.472
PV08_05339	PV08_02911	A0A0D2BVH9	A0A0D2A0X4	Uncharacterized protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.737