47 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_08033	Uncharacterized protein. (360 aa)
	PV08_08008	PKS_ER domain-containing protein. (364 aa)
	PV08_10983	Chromatin modification-related protein. (445 aa)
	PV08_06224	Arrestin_C domain-containing protein. (877 aa)
	PV08_04259	Uncharacterized protein. (94 aa)
	PV08_04326	PKS_ER domain-containing protein. (392 aa)
	PV08_04808	PKS_ER domain-containing protein. (368 aa)
	PV08_05158	PKS_ER domain-containing protein. (364 aa)
	PV08_10358	ADH_N domain-containing protein. (380 aa)
	PV08_10474	SP-RING-type domain-containing protein. (877 aa)
	PV08_03107	Uncharacterized protein. (53 aa)
	PV08_00823	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (528 aa)
	PV08_00833	Protein kinase domain-containing protein. (816 aa)
	PV08_01302	PKS_ER domain-containing protein. (353 aa)
	PV08_07006	Chromatin modification-related protein. (767 aa)
	PV08_02190	Uncharacterized protein. (378 aa)
	PV08_02197	Uncharacterized protein. (295 aa)
	PV08_05204	PKS_ER domain-containing protein. (358 aa)
	PV08_05974	Uncharacterized protein. (486 aa)
	PV08_06024	Uncharacterized protein. (265 aa)
	PV08_04420	Uncharacterized protein. (333 aa)
	PV08_02034	PKS_ER domain-containing protein. (339 aa)
	PV08_01417	PKS_ER domain-containing protein. (360 aa)
	PV08_02417	PKS_ER domain-containing protein. (362 aa)
	PV08_01307	Uncharacterized protein. (459 aa)
	PV08_10319	PKS_ER domain-containing protein. (364 aa)
	PV08_08105	Ubiquitin-like domain-containing protein. (101 aa)
	PV08_08017	Uncharacterized protein. (369 aa)
	PV08_08944	PKS_ER domain-containing protein. (354 aa)
	PV08_07815	PKS_ER domain-containing protein. (365 aa)
	PV08_05692	PKS_ER domain-containing protein. (355 aa)
	PV08_04511	Uncharacterized protein. (399 aa)
	PV08_00487	UBIQUITIN_CONJUGAT_2 domain-containing protein. (667 aa)
	PV08_03702	PKS_ER domain-containing protein. (363 aa)
	PV08_03106	Uncharacterized protein. (297 aa)
	PV08_02911	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	PV08_04258	Uncharacterized protein. (521 aa)
	PV08_05403	ING domain-containing protein. (780 aa)
	PV08_05378	C3H1-type domain-containing protein. (419 aa)
	PV08_06828	Uncharacterized protein. (375 aa)
	PV08_07974	PKS_ER domain-containing protein. (375 aa)
	PV08_10667	YDG domain-containing protein. (567 aa)
	PV08_10617	PKS_ER domain-containing protein. (356 aa)
	PV08_02639	PKS_ER domain-containing protein. (360 aa)
	PV08_05331	PKS_ER domain-containing protein. (361 aa)
	PV08_07576	PKS_ER domain-containing protein. (330 aa)
	PV08_07048	PKS_ER domain-containing protein. (366 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00487	PV08_00823	A0A0D2A536	A0A0D2BMS5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	0.654
PV08_00487	PV08_00833	A0A0D2A536	A0A0D2BMT5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein.	0.713
PV08_00487	PV08_08105	A0A0D2A536	A0A0D2B1Z0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.974
PV08_00487	PV08_10474	A0A0D2A536	A0A0D2BII2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SP-RING-type domain-containing protein.	0.922
PV08_00823	PV08_00487	A0A0D2BMS5	A0A0D2A536	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.654
PV08_00823	PV08_02911	A0A0D2BMS5	A0A0D2A0X4	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.659
PV08_00823	PV08_08105	A0A0D2BMS5	A0A0D2B1Z0	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	Ubiquitin-like domain-containing protein.	0.763
PV08_00823	PV08_10474	A0A0D2BMS5	A0A0D2BII2	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	SP-RING-type domain-containing protein.	0.504
PV08_00833	PV08_00487	A0A0D2BMT5	A0A0D2A536	Protein kinase domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.713
PV08_00833	PV08_02911	A0A0D2BMT5	A0A0D2A0X4	Protein kinase domain-containing protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.741
PV08_00833	PV08_08105	A0A0D2BMT5	A0A0D2B1Z0	Protein kinase domain-containing protein.	Ubiquitin-like domain-containing protein.	0.767
PV08_01302	PV08_02190	A0A0D2BQG4	A0A0D2BT76	PKS_ER domain-containing protein.	Uncharacterized protein.	0.624
PV08_01307	PV08_02190	A0A0D2CAX8	A0A0D2BT76	Uncharacterized protein.	Uncharacterized protein.	0.586
PV08_01417	PV08_02190	A0A0D2CBB2	A0A0D2BT76	PKS_ER domain-containing protein.	Uncharacterized protein.	0.616
PV08_01417	PV08_10617	A0A0D2CBB2	A0A0D1ZE81	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.594
PV08_02034	PV08_02190	A0A0D2CD61	A0A0D2BT76	PKS_ER domain-containing protein.	Uncharacterized protein.	0.631
PV08_02190	PV08_01302	A0A0D2BT76	A0A0D2BQG4	Uncharacterized protein.	PKS_ER domain-containing protein.	0.624
PV08_02190	PV08_01307	A0A0D2BT76	A0A0D2CAX8	Uncharacterized protein.	Uncharacterized protein.	0.586
PV08_02190	PV08_01417	A0A0D2BT76	A0A0D2CBB2	Uncharacterized protein.	PKS_ER domain-containing protein.	0.616
PV08_02190	PV08_02034	A0A0D2BT76	A0A0D2CD61	Uncharacterized protein.	PKS_ER domain-containing protein.	0.631