16 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_07844	Uncharacterized protein. (339 aa)
	PV08_07511	Uncharacterized protein. (191 aa)
	PV08_01966	Uncharacterized protein. (370 aa)
	PV08_01896	Uncharacterized protein. (689 aa)
	PV08_01444	PRKCSH domain-containing protein. (469 aa)
	PV08_10350	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV08_10210	Uncharacterized protein. (806 aa)
	PV08_00622	Uncharacterized protein. (710 aa)
	PV08_11174	Uncharacterized protein. (1134 aa)
	PV08_11376	BZIP domain-containing protein. (465 aa)
	PV08_05963	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (643 aa)
	PV08_01180	Uncharacterized protein. (1427 aa)
	PV08_01928	Ubiquitin-like domain-containing protein. (592 aa)
	PV08_03583	Uncharacterized protein. (907 aa)
	PV08_00223	Polyubiquitin. (305 aa)
	PV08_06373	AAA domain-containing protein. (697 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00223	PV08_00622	A0A0D2C7U5	A0A0D2A5L7	Polyubiquitin.	Uncharacterized protein.	0.952
PV08_00223	PV08_01180	A0A0D2C7U5	A0A0D2BQ28	Polyubiquitin.	Uncharacterized protein.	0.527
PV08_00223	PV08_01444	A0A0D2C7U5	A0A0D1YZX0	Polyubiquitin.	PRKCSH domain-containing protein.	0.636
PV08_00223	PV08_01896	A0A0D2C7U5	A0A0D1Z0Y7	Polyubiquitin.	Uncharacterized protein.	0.557
PV08_00223	PV08_01928	A0A0D2C7U5	A0A0D2BQS0	Polyubiquitin.	Ubiquitin-like domain-containing protein.	0.835
PV08_00223	PV08_01966	A0A0D2C7U5	A0A0D1Z151	Polyubiquitin.	Uncharacterized protein.	0.685
PV08_00223	PV08_03583	A0A0D2C7U5	A0A0D2C6T1	Polyubiquitin.	Uncharacterized protein.	0.689
PV08_00223	PV08_06373	A0A0D2C7U5	A0A0D1ZU51	Polyubiquitin.	AAA domain-containing protein.	0.817
PV08_00223	PV08_07511	A0A0D2C7U5	A0A0D1ZPI0	Polyubiquitin.	Uncharacterized protein.	0.636
PV08_00223	PV08_07844	A0A0D2C7U5	A0A0D1ZQK7	Polyubiquitin.	Uncharacterized protein.	0.527
PV08_00223	PV08_10210	A0A0D2C7U5	A0A0D1Y7L8	Polyubiquitin.	Uncharacterized protein.	0.517
PV08_00223	PV08_10350	A0A0D2C7U5	A0A0D1Y801	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.968
PV08_00223	PV08_11174	A0A0D2C7U5	A0A0D2ATZ2	Polyubiquitin.	Uncharacterized protein.	0.517
PV08_00223	PV08_11376	A0A0D2C7U5	A0A0D2AUK8	Polyubiquitin.	BZIP domain-containing protein.	0.961
PV08_00622	PV08_00223	A0A0D2A5L7	A0A0D2C7U5	Uncharacterized protein.	Polyubiquitin.	0.952
PV08_00622	PV08_01444	A0A0D2A5L7	A0A0D1YZX0	Uncharacterized protein.	PRKCSH domain-containing protein.	0.916
PV08_00622	PV08_01896	A0A0D2A5L7	A0A0D1Z0Y7	Uncharacterized protein.	Uncharacterized protein.	0.765
PV08_00622	PV08_01928	A0A0D2A5L7	A0A0D2BQS0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.792
PV08_00622	PV08_01966	A0A0D2A5L7	A0A0D1Z151	Uncharacterized protein.	Uncharacterized protein.	0.650
PV08_00622	PV08_03583	A0A0D2A5L7	A0A0D2C6T1	Uncharacterized protein.	Uncharacterized protein.	0.933