53 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_02470	Uncharacterized protein. (328 aa)
	PV08_02560	Uncharacterized protein. (230 aa)
	PV08_01132	Protein kinase domain-containing protein. (1253 aa)
	PV08_01350	Protein-S-isoprenylcysteine O-methyltransferase; Belongs to the class VI-like SAM-binding methyltransferase superfamily. Isoprenylcysteine carboxyl methyltransferase family. (244 aa)
	PV08_11376	BZIP domain-containing protein. (465 aa)
	PV08_10733	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (416 aa)
	PV08_08255	Abhydrolase_2 domain-containing protein. (285 aa)
	PV08_08936	WD_REPEATS_REGION domain-containing protein. (335 aa)
	PV08_07429	Uncharacterized protein. (719 aa)
	PV08_07504	Uncharacterized protein. (235 aa)
	PV08_07797	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (607 aa)
	PV08_05330	Uncharacterized protein. (261 aa)
	PV08_10090	Cell division control protein 42. (245 aa)
	PV08_06044	Uncharacterized protein. (197 aa)
	PV08_06568	Uncharacterized protein. (192 aa)
	PV08_02653	Protein kinase domain-containing protein. (666 aa)
	PV08_10936	Protein kinase domain-containing protein. (523 aa)
	PV08_00222	Uncharacterized protein. (808 aa)
	PV08_00214	Uncharacterized protein. (856 aa)
	PV08_09606	Uncharacterized protein. (359 aa)
	PV08_11122	Uncharacterized protein. (424 aa)
	PV08_02205	Uncharacterized protein. (251 aa)
	PV08_06755	Importin N-terminal domain-containing protein. (1072 aa)
	PV08_06255	Uncharacterized protein. (217 aa)
	PV08_06486	Abhydrolase_2 domain-containing protein. (359 aa)
	PV08_04844	Uncharacterized protein. (566 aa)
	PV08_02702	Uncharacterized protein. (264 aa)
	PV08_00223	Polyubiquitin. (305 aa)
	PV08_01113	Non-specific serine/threonine protein kinase. (874 aa)
	PV08_01292	Uncharacterized protein. (495 aa)
	PV08_01928	Ubiquitin-like domain-containing protein. (592 aa)
	PV08_01938	Uncharacterized protein. (248 aa)
	PV08_01529	Uncharacterized protein. (689 aa)
	PV08_10350	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV08_10832	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (459 aa)
	PV08_08283	Uncharacterized protein. (305 aa)
	PV08_07148	Prohibitin. (283 aa)
	PV08_07158	TYR_PHOSPHATASE_2 domain-containing protein. (646 aa)
	PV08_07194	Uncharacterized protein. (172 aa)
	PV08_05961	Uncharacterized protein. (154 aa)
	PV08_06478	Non-specific serine/threonine protein kinase. (872 aa)
	PV08_06535	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (491 aa)
	PV08_03946	Zn(2)-C6 fungal-type domain-containing protein. (930 aa)
	PV08_02464	Metallophos domain-containing protein. (427 aa)
	PV08_02965	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (147 aa)
	PV08_02990	Abhydrolase_2 domain-containing protein. (257 aa)
	PV08_01966	Uncharacterized protein. (370 aa)
	PV08_11375	Uncharacterized protein. (172 aa)
	PV08_10316	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (357 aa)
	PV08_06033	Uncharacterized protein. (326 aa)
	PV08_06058	Uncharacterized protein. (747 aa)
	PV08_04566	Abhydrolase_2 domain-containing protein. (234 aa)
	PV08_04957	Uncharacterized protein. (170 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00214	PV08_01529	A0A0D2BM23	A0A0D2BR91	Uncharacterized protein.	Uncharacterized protein.	0.412
PV08_00214	PV08_01938	A0A0D2BM23	A0A0D2BQT0	Uncharacterized protein.	Uncharacterized protein.	0.416
PV08_00214	PV08_02653	A0A0D2BM23	A0A0D2BID4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.656
PV08_00214	PV08_03946	A0A0D2BM23	A0A0D1YNR7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.453
PV08_00214	PV08_04844	A0A0D2BM23	A0A0D2C1X2	Uncharacterized protein.	Uncharacterized protein.	0.837
PV08_00214	PV08_04957	A0A0D2BM23	A0A0D1ZYL7	Uncharacterized protein.	Uncharacterized protein.	0.862
PV08_00214	PV08_05330	A0A0D2BM23	A0A0D2B9F9	Uncharacterized protein.	Uncharacterized protein.	0.416
PV08_00214	PV08_06033	A0A0D2BM23	A0A0D1ZT87	Uncharacterized protein.	Uncharacterized protein.	0.412
PV08_00214	PV08_06044	A0A0D2BM23	A0A0D2BAL9	Uncharacterized protein.	Uncharacterized protein.	0.413
PV08_00214	PV08_06058	A0A0D2BM23	A0A0D1ZTD2	Uncharacterized protein.	Uncharacterized protein.	0.544
PV08_00214	PV08_06535	A0A0D2BM23	A0A0D1YN53	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.531
PV08_00214	PV08_06568	A0A0D2BM23	A0A0D2BC34	Uncharacterized protein.	Uncharacterized protein.	0.416
PV08_00214	PV08_07429	A0A0D2BM23	A0A0D2B7I9	Uncharacterized protein.	Uncharacterized protein.	0.767
PV08_00214	PV08_10090	A0A0D2BM23	A0A0D1Y7A2	Uncharacterized protein.	Cell division control protein 42.	0.400
PV08_00214	PV08_10316	A0A0D2BM23	A0A0D1ZDI7	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.889
PV08_00214	PV08_10733	A0A0D2BM23	A0A0D2AXJ7	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.895
PV08_00214	PV08_10936	A0A0D2BM23	A0A0D2BK32	Uncharacterized protein.	Protein kinase domain-containing protein.	0.542
PV08_00214	PV08_11122	A0A0D2BM23	A0A0D1Y5F3	Uncharacterized protein.	Uncharacterized protein.	0.496
PV08_00222	PV08_00223	A0A0D2BL14	A0A0D2C7U5	Uncharacterized protein.	Polyubiquitin.	0.936
PV08_00222	PV08_01928	A0A0D2BL14	A0A0D2BQS0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.719