18 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_00960	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (463 aa)
	PV08_11585	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (419 aa)
	PV08_08323	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (625 aa)
	PV08_03724	Uncharacterized protein. (871 aa)
	PV08_03991	RECA_2 domain-containing protein. (483 aa)
	PV08_04352	Uncharacterized protein. (379 aa)
	PV08_05176	Uncharacterized protein. (308 aa)
	PV08_01919	Protein kinase domain-containing protein. (746 aa)
	PV08_11329	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (349 aa)
	PV08_10010	Uncharacterized protein. (1018 aa)
	PV08_01269	Protein kinase domain-containing protein. (522 aa)
	PV08_02267	Helicase ATP-binding domain-containing protein. (1253 aa)
	PV08_10289	Rad51 domain-containing protein. (519 aa)
	PV08_07322	Uncharacterized protein. (1513 aa)
	PV08_07845	DUF1767 domain-containing protein. (291 aa)
	PV08_05689	Protein kinase domain-containing protein. (311 aa)
	PV08_03907	Uncharacterized protein. (1179 aa)
	PV08_03422	Protein kinase domain-containing protein. (538 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00960	PV08_02267	A0A0D2BPE0	A0A0D2AA93	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase ATP-binding domain-containing protein.	0.465
PV08_00960	PV08_03724	A0A0D2BPE0	A0A0D1YNA6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.465
PV08_00960	PV08_03907	A0A0D2BPE0	A0A0D2BCL3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.416
PV08_00960	PV08_03991	A0A0D2BPE0	A0A0D1YNU8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RECA_2 domain-containing protein.	0.784
PV08_00960	PV08_05176	A0A0D2BPE0	A0A0D1YRX9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.465
PV08_00960	PV08_07322	A0A0D2BPE0	A0A0D2B6P6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.465
PV08_00960	PV08_07845	A0A0D2BPE0	A0A0D2B852	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DUF1767 domain-containing protein.	0.431
PV08_00960	PV08_10010	A0A0D2BPE0	A0A0D1ZIQ1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.465
PV08_00960	PV08_11329	A0A0D2BPE0	A0A0D1ZBF2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.784
PV08_01269	PV08_02267	A0A0D2A7E2	A0A0D2AA93	Protein kinase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.465
PV08_01269	PV08_03724	A0A0D2A7E2	A0A0D1YNA6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.465
PV08_01269	PV08_03907	A0A0D2A7E2	A0A0D2BCL3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.416
PV08_01269	PV08_03991	A0A0D2A7E2	A0A0D1YNU8	Protein kinase domain-containing protein.	RECA_2 domain-containing protein.	0.784
PV08_01269	PV08_05176	A0A0D2A7E2	A0A0D1YRX9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.465
PV08_01269	PV08_07322	A0A0D2A7E2	A0A0D2B6P6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.465
PV08_01269	PV08_07845	A0A0D2A7E2	A0A0D2B852	Protein kinase domain-containing protein.	DUF1767 domain-containing protein.	0.431
PV08_01269	PV08_10010	A0A0D2A7E2	A0A0D1ZIQ1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.465
PV08_01269	PV08_11329	A0A0D2A7E2	A0A0D1ZBF2	Protein kinase domain-containing protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.784
PV08_01919	PV08_02267	A0A0D2CCV9	A0A0D2AA93	Protein kinase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.465
PV08_01919	PV08_03724	A0A0D2CCV9	A0A0D1YNA6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.465