16 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_08025	CPSF_A domain-containing protein. (1205 aa)
	PV08_00487	UBIQUITIN_CONJUGAT_2 domain-containing protein. (667 aa)
	PV08_11283	ERCC4 domain-containing protein. (944 aa)
	PV08_05766	Uncharacterized protein. (244 aa)
	PV08_10350	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV08_01625	CULLIN_2 domain-containing protein; Belongs to the cullin family. (896 aa)
	PV08_07587	Uncharacterized protein. (1201 aa)
	PV08_06173	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	PV08_03815	RING-box protein 1. (125 aa)
	PV08_00223	Polyubiquitin. (305 aa)
	PV08_01928	Ubiquitin-like domain-containing protein. (592 aa)
	PV08_00928	UV excision repair protein Rad23. (839 aa)
	PV08_04231	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (536 aa)
	PV08_08616	BRCT domain-containing protein. (560 aa)
	PV08_08227	Uncharacterized protein. (378 aa)
	PV08_11376	BZIP domain-containing protein. (465 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00223	PV08_00487	A0A0D2C7U5	A0A0D2A536	Polyubiquitin.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.776
PV08_00223	PV08_00928	A0A0D2C7U5	A0A0D2BN39	Polyubiquitin.	UV excision repair protein Rad23.	0.984
PV08_00223	PV08_01625	A0A0D2C7U5	A0A0D1Z0F0	Polyubiquitin.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.788
PV08_00223	PV08_01928	A0A0D2C7U5	A0A0D2BQS0	Polyubiquitin.	Ubiquitin-like domain-containing protein.	0.835
PV08_00223	PV08_03815	A0A0D2C7U5	A0A0D1ZV76	Polyubiquitin.	RING-box protein 1.	0.936
PV08_00223	PV08_04231	A0A0D2C7U5	A0A0D2BEN6	Polyubiquitin.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.690
PV08_00223	PV08_05766	A0A0D2C7U5	A0A0D1YL02	Polyubiquitin.	Uncharacterized protein.	0.693
PV08_00223	PV08_06173	A0A0D2C7U5	A0A0D1ZTL9	Polyubiquitin.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.657
PV08_00223	PV08_07587	A0A0D2C7U5	A0A0D1ZPQ9	Polyubiquitin.	Uncharacterized protein.	0.646
PV08_00223	PV08_08025	A0A0D2C7U5	A0A0D2B1M1	Polyubiquitin.	CPSF_A domain-containing protein.	0.777
PV08_00223	PV08_08227	A0A0D2C7U5	A0A0D2B375	Polyubiquitin.	Uncharacterized protein.	0.744
PV08_00223	PV08_08616	A0A0D2C7U5	A0A0D2B3G2	Polyubiquitin.	BRCT domain-containing protein.	0.646
PV08_00223	PV08_10350	A0A0D2C7U5	A0A0D1Y801	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.968
PV08_00223	PV08_11283	A0A0D2C7U5	A0A0D1Y5Y9	Polyubiquitin.	ERCC4 domain-containing protein.	0.692
PV08_00223	PV08_11376	A0A0D2C7U5	A0A0D2AUK8	Polyubiquitin.	BZIP domain-containing protein.	0.961
PV08_00487	PV08_00223	A0A0D2A536	A0A0D2C7U5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Polyubiquitin.	0.776
PV08_00487	PV08_00928	A0A0D2A536	A0A0D2BN39	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UV excision repair protein Rad23.	0.761
PV08_00487	PV08_01625	A0A0D2A536	A0A0D1Z0F0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.687
PV08_00487	PV08_01928	A0A0D2A536	A0A0D2BQS0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.753
PV08_00487	PV08_03815	A0A0D2A536	A0A0D1ZV76	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RING-box protein 1.	0.845