88 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_01969	CCHC-type domain-containing protein. (393 aa)
	PV08_01079	Uncharacterized protein. (1666 aa)
	PV08_00549	PCI domain-containing protein. (479 aa)
	PV08_00223	Polyubiquitin. (305 aa)
	PV08_00031	Uncharacterized protein. (867 aa)
	PV08_02547	AAA domain-containing protein. (407 aa)
	PV08_05039	Uncharacterized protein. (810 aa)
	PV08_01950	DNA repair protein. (360 aa)
	PV08_01865	Transcription elongation factor S-II. (305 aa)
	PV08_01830	MPN domain-containing protein. (371 aa)
	PV08_06790	Replication factor C subunit 1. (1080 aa)
	PV08_01684	AAA domain-containing protein. (1093 aa)
	PV08_01579	Pre-mRNA-splicing factor syf1. (850 aa)
	PV08_02143	Uncharacterized protein. (581 aa)
	PV08_01928	Ubiquitin-like domain-containing protein. (592 aa)
	PV08_01768	CBFD_NFYB_HMF domain-containing protein. (188 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_10007	Uncharacterized protein. (134 aa)
	PV08_00928	UV excision repair protein Rad23. (839 aa)
	PV08_00613	Uncharacterized protein. (529 aa)
	PV08_00518	RPOL4c domain-containing protein. (152 aa)
	PV08_00287	AAA domain-containing protein. (413 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_03345	Uncharacterized protein. (1110 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_03597	Uncharacterized protein. (1051 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_10368	Peptidyl-prolyl cis-trans isomerase D. (371 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_04780	Uncharacterized protein. (1338 aa)
	PV08_05048	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1411 aa)
	PV08_04361	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (731 aa)
	PV08_04231	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (536 aa)
	PV08_11884	Amino_oxidase domain-containing protein. (534 aa)
	PV08_04550	MPN domain-containing protein. (416 aa)
	PV08_04399	Replication factor C subunit 4. (352 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_06286	Zds_C domain-containing protein. (916 aa)
	PV08_05835	Uncharacterized protein. (858 aa)
	PV08_05603	Uncharacterized protein. (165 aa)
	PV08_05793	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (456 aa)
	PV08_07820	PCI domain-containing protein. (312 aa)
	PV08_08764	Uncharacterized protein; Belongs to the peptidase C19 family. (1157 aa)
	PV08_08985	HTH myb-type domain-containing protein. (556 aa)
	PV08_08616	BRCT domain-containing protein. (560 aa)
	PV08_08227	Uncharacterized protein. (378 aa)
	PV08_08506	Uncharacterized protein. (255 aa)
	PV08_08190	COP9 signalosome complex subunit 2. (505 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_08025	CPSF_A domain-containing protein. (1205 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_09062	RPOLD domain-containing protein. (334 aa)
	PV08_09216	Uncharacterized protein. (226 aa)
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_09060	Uncharacterized protein; Belongs to the actin family. (760 aa)
	PV08_09055	YL1_C domain-containing protein. (197 aa)
	PV08_11376	BZIP domain-containing protein. (465 aa)
	PV08_01972	Uncharacterized protein. (275 aa)
	PV08_01626	Uncharacterized protein. (111 aa)
	PV08_01340	RNA_pol_L_2 domain-containing protein. (243 aa)
	PV08_00992	USP domain-containing protein; Belongs to the peptidase C19 family. (1280 aa)
	PV08_00832	Uncharacterized protein. (1194 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_00487	UBIQUITIN_CONJUGAT_2 domain-containing protein. (667 aa)
	PV08_03302	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
	PV08_05002	WD_REPEATS_REGION domain-containing protein. (508 aa)
	PV08_04842	UmuC domain-containing protein. (682 aa)
	PV08_03815	RING-box protein 1. (125 aa)
	PV08_06173	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	PV08_07587	Uncharacterized protein. (1201 aa)
	PV08_06833	RRM domain-containing protein. (155 aa)
	PV08_06808	Replication factor C subunit 5. (354 aa)
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_01625	CULLIN_2 domain-containing protein; Belongs to the cullin family. (896 aa)
	PV08_01560	WD_REPEATS_REGION domain-containing protein. (470 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_00701	PCI domain-containing protein. (420 aa)
	PV08_03721	Uncharacterized protein. (265 aa)
	PV08_03341	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
	PV08_05766	Uncharacterized protein. (244 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_07983	Uncharacterized protein. (151 aa)
	PV08_09008	CCHC-type domain-containing protein. (938 aa)
	PV08_10350	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV08_10280	PCI domain-containing protein. (487 aa)
	PV08_11283	ERCC4 domain-containing protein. (944 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00031	PV08_00060	A0A0D2C7C8	A0A0D2BKM9	Uncharacterized protein.	DNA repair helicase rad15.	0.670
PV08_00031	PV08_00223	A0A0D2C7C8	A0A0D2C7U5	Uncharacterized protein.	Polyubiquitin.	0.742
PV08_00031	PV08_00518	A0A0D2C7C8	A0A0D2BLX8	Uncharacterized protein.	RPOL4c domain-containing protein.	0.627
PV08_00031	PV08_00549	A0A0D2C7C8	A0A0D2C8V9	Uncharacterized protein.	PCI domain-containing protein.	0.949
PV08_00031	PV08_00612	A0A0D2C7C8	A0A0D2A5L2	Uncharacterized protein.	S1 domain-containing protein.	0.622
PV08_00031	PV08_00613	A0A0D2C7C8	A0A0D2BMA0	Uncharacterized protein.	Uncharacterized protein.	0.622
PV08_00031	PV08_00701	A0A0D2C7C8	A0A0D1YXX0	Uncharacterized protein.	PCI domain-containing protein.	0.963
PV08_00031	PV08_00705	A0A0D2C7C8	A0A0D2BNM3	Uncharacterized protein.	Uncharacterized protein.	0.663
PV08_00031	PV08_00832	A0A0D2C7C8	A0A0D2A640	Uncharacterized protein.	Uncharacterized protein.	0.666
PV08_00031	PV08_00928	A0A0D2C7C8	A0A0D2BN39	Uncharacterized protein.	UV excision repair protein Rad23.	0.770
PV08_00031	PV08_01340	A0A0D2C7C8	A0A0D2A7J8	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.640
PV08_00031	PV08_01625	A0A0D2C7C8	A0A0D1Z0F0	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.890
PV08_00031	PV08_01865	A0A0D2C7C8	A0A0D2BS72	Uncharacterized protein.	Transcription elongation factor S-II.	0.686
PV08_00031	PV08_01928	A0A0D2C7C8	A0A0D2BQS0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.750
PV08_00031	PV08_02372	A0A0D2C7C8	A0A0D2BHK3	Uncharacterized protein.	Uncharacterized protein.	0.638
PV08_00031	PV08_02977	A0A0D2C7C8	A0A0D2BI97	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.645
PV08_00031	PV08_03302	A0A0D2C7C8	A0A0D2A281	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.478
PV08_00031	PV08_03341	A0A0D2C7C8	A0A0D1YUW7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.702
PV08_00031	PV08_03345	A0A0D2C7C8	A0A0D2BKH4	Uncharacterized protein.	Uncharacterized protein.	0.666
PV08_00031	PV08_03815	A0A0D2C7C8	A0A0D1ZV76	Uncharacterized protein.	RING-box protein 1.	0.878