62 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_04780	Uncharacterized protein. (1338 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_10368	Peptidyl-prolyl cis-trans isomerase D. (371 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_03597	Uncharacterized protein. (1051 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_03345	Uncharacterized protein. (1110 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_00518	RPOL4c domain-containing protein. (152 aa)
	PV08_00613	Uncharacterized protein. (529 aa)
	PV08_10007	Uncharacterized protein. (134 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_01768	CBFD_NFYB_HMF domain-containing protein. (188 aa)
	PV08_01928	Ubiquitin-like domain-containing protein. (592 aa)
	PV08_02143	Uncharacterized protein. (581 aa)
	PV08_01579	Pre-mRNA-splicing factor syf1. (850 aa)
	PV08_01684	AAA domain-containing protein. (1093 aa)
	PV08_01865	Transcription elongation factor S-II. (305 aa)
	PV08_01950	DNA repair protein. (360 aa)
	PV08_00223	Polyubiquitin. (305 aa)
	PV08_01969	CCHC-type domain-containing protein. (393 aa)
	PV08_10350	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV08_11283	ERCC4 domain-containing protein. (944 aa)
	PV08_09008	CCHC-type domain-containing protein. (938 aa)
	PV08_07983	Uncharacterized protein. (151 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_03341	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
	PV08_03721	Uncharacterized protein. (265 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_01560	WD_REPEATS_REGION domain-containing protein. (470 aa)
	PV08_01625	CULLIN_2 domain-containing protein; Belongs to the cullin family. (896 aa)
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_06833	RRM domain-containing protein. (155 aa)
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_06173	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	PV08_03815	RING-box protein 1. (125 aa)
	PV08_04842	UmuC domain-containing protein. (682 aa)
	PV08_05002	WD_REPEATS_REGION domain-containing protein. (508 aa)
	PV08_03302	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_00832	Uncharacterized protein. (1194 aa)
	PV08_00992	USP domain-containing protein; Belongs to the peptidase C19 family. (1280 aa)
	PV08_01340	RNA_pol_L_2 domain-containing protein. (243 aa)
	PV08_01626	Uncharacterized protein. (111 aa)
	PV08_11376	BZIP domain-containing protein. (465 aa)
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_09216	Uncharacterized protein. (226 aa)
	PV08_09062	RPOLD domain-containing protein. (334 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_08025	CPSF_A domain-containing protein. (1205 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_08506	Uncharacterized protein. (255 aa)
	PV08_08227	Uncharacterized protein. (378 aa)
	PV08_08985	HTH myb-type domain-containing protein. (556 aa)
	PV08_08764	Uncharacterized protein; Belongs to the peptidase C19 family. (1157 aa)
	PV08_05603	Uncharacterized protein. (165 aa)
	PV08_05835	Uncharacterized protein. (858 aa)
	PV08_06286	Zds_C domain-containing protein. (916 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_11884	Amino_oxidase domain-containing protein. (534 aa)
	PV08_05048	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1411 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00060	PV08_00223	A0A0D2BKM9	A0A0D2C7U5	DNA repair helicase rad15.	Polyubiquitin.	0.688
PV08_00060	PV08_00518	A0A0D2BKM9	A0A0D2BLX8	DNA repair helicase rad15.	RPOL4c domain-containing protein.	0.973
PV08_00060	PV08_00612	A0A0D2BKM9	A0A0D2A5L2	DNA repair helicase rad15.	S1 domain-containing protein.	0.966
PV08_00060	PV08_00613	A0A0D2BKM9	A0A0D2BMA0	DNA repair helicase rad15.	Uncharacterized protein.	0.944
PV08_00060	PV08_00705	A0A0D2BKM9	A0A0D2BNM3	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_00832	A0A0D2BKM9	A0A0D2A640	DNA repair helicase rad15.	Uncharacterized protein.	0.817
PV08_00060	PV08_01340	A0A0D2BKM9	A0A0D2A7J8	DNA repair helicase rad15.	RNA_pol_L_2 domain-containing protein.	0.965
PV08_00060	PV08_01525	A0A0D2BKM9	A0A0D1Z066	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_01579	A0A0D2BKM9	A0A0D2BRJ1	DNA repair helicase rad15.	Pre-mRNA-splicing factor syf1.	0.625
PV08_00060	PV08_01625	A0A0D2BKM9	A0A0D1Z0F0	DNA repair helicase rad15.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.748
PV08_00060	PV08_01626	A0A0D2BKM9	A0A0D2A8F9	DNA repair helicase rad15.	Uncharacterized protein.	0.404
PV08_00060	PV08_01684	A0A0D2BKM9	A0A0D2BRS7	DNA repair helicase rad15.	AAA domain-containing protein.	0.771
PV08_00060	PV08_01865	A0A0D2BKM9	A0A0D2BS72	DNA repair helicase rad15.	Transcription elongation factor S-II.	0.964
PV08_00060	PV08_01928	A0A0D2BKM9	A0A0D2BQS0	DNA repair helicase rad15.	Ubiquitin-like domain-containing protein.	0.669
PV08_00060	PV08_01950	A0A0D2BKM9	A0A0D2BSG4	DNA repair helicase rad15.	DNA repair protein.	0.980
PV08_00060	PV08_01969	A0A0D2BKM9	A0A0D2CD06	DNA repair helicase rad15.	CCHC-type domain-containing protein.	0.404
PV08_00060	PV08_02372	A0A0D2BKM9	A0A0D2BHK3	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02977	A0A0D2BKM9	A0A0D2BI97	DNA repair helicase rad15.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
PV08_00060	PV08_03302	A0A0D2BKM9	A0A0D2A281	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
PV08_00060	PV08_03341	A0A0D2BKM9	A0A0D1YUW7	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.971