STRINGSTRING
PV08_08398 PV08_08398 PV08_03341 PV08_03341 PV08_01525 PV08_01525 PV08_11319 PV08_11319 PV08_10537 PV08_10537 PV08_09699 PV08_09699 PV08_09759 PV08_09759 PV08_08139 PV08_08139 PV08_08159 PV08_08159 PV08_06873 PV08_06873 PV08_07724 PV08_07724 PV08_03001 PV08_03001 PV08_03302 PV08_03302 PV08_00612 PV08_00612 PV08_01340 PV08_01340 PV08_11146 PV08_11146 PV08_09080 PV08_09080 PV08_09062 PV08_09062 PV08_09213 PV08_09213 PV08_09645 PV08_09645 PV08_09592 PV08_09592 PV08_09898 PV08_09898 PV08_07242 PV08_07242 PV08_07244 PV08_07244 PV08_07727 PV08_07727 PV08_05835 PV08_05835 PV08_03909 PV08_03909 PV08_02546 PV08_02546 PV08_02372 PV08_02372 PV08_02977 PV08_02977 PV08_11001 PV08_11001 PV08_00060 PV08_00060 PV08_00518 PV08_00518 PV08_00613 PV08_00613 PV08_00705 PV08_00705 PV08_01865 PV08_01865 PV08_06965 PV08_06965 PV08_07136 PV08_07136 PV08_04400 PV08_04400 PV08_01483 PV08_01483
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV08_08398Uncharacterized protein. (74 aa)
PV08_03341DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
PV08_01525Uncharacterized protein. (505 aa)
PV08_11319Uncharacterized protein; Belongs to the cyclin family. (506 aa)
PV08_10537RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
PV08_09699Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1089 aa)
PV08_09759Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (117 aa)
PV08_08139Uncharacterized protein. (384 aa)
PV08_08159Uncharacterized protein. (420 aa)
PV08_06873BSD domain-containing protein. (630 aa)
PV08_07724Protein kinase domain-containing protein. (888 aa)
PV08_03001Uncharacterized protein. (1024 aa)
PV08_03302DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
PV08_00612S1 domain-containing protein. (167 aa)
PV08_01340RNA_pol_L_2 domain-containing protein. (243 aa)
PV08_11146Serine/threonine-protein kinase bur1. (655 aa)
PV08_09080DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
PV08_09062RPOLD domain-containing protein. (334 aa)
PV08_09213Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (103 aa)
PV08_09645Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
PV08_09592RING-type domain-containing protein. (265 aa)
PV08_09898Uncharacterized protein. (238 aa)
PV08_07242Uncharacterized protein. (704 aa)
PV08_07244Uncharacterized protein. (707 aa)
PV08_07727RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (855 aa)
PV08_05835Uncharacterized protein. (858 aa)
PV08_03909CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
PV08_02546Protein kinase domain-containing protein. (992 aa)
PV08_02372Uncharacterized protein. (843 aa)
PV08_02977General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
PV08_11001DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
PV08_00060DNA repair helicase rad15. (816 aa)
PV08_00518RPOL4c domain-containing protein. (152 aa)
PV08_00613Uncharacterized protein. (529 aa)
PV08_00705Uncharacterized protein. (152 aa)
PV08_01865Transcription elongation factor S-II. (305 aa)
PV08_06965FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (616 aa)
PV08_07136CYCLIN domain-containing protein; Belongs to the cyclin family. (410 aa)
PV08_04400CFEM domain-containing protein. (275 aa)
PV08_01483Uncharacterized protein. (372 aa)
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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