120 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_05434	Fungal_trans domain-containing protein. (978 aa)
	PV08_01189	Isochorismatase domain-containing protein. (200 aa)
	PV08_01054	Uncharacterized protein. (265 aa)
	PV08_00704	Uncharacterized protein. (539 aa)
	PV08_00021	Lactamase_B domain-containing protein. (350 aa)
	PV08_03674	Uncharacterized protein. (335 aa)
	PV08_03664	Uncharacterized protein. (640 aa)
	PV08_03558	Uncharacterized protein. (376 aa)
	PV08_02507	Uncharacterized protein. (348 aa)
	PV08_03867	Fungal_trans domain-containing protein. (650 aa)
	PV08_07816	C2H2-type domain-containing protein. (439 aa)
	PV08_07811	Acyl_transf_3 domain-containing protein. (499 aa)
	PV08_07136	CYCLIN domain-containing protein; Belongs to the cyclin family. (410 aa)
	PV08_07126	Fungal_trans domain-containing protein. (793 aa)
	PV08_07066	Uncharacterized protein. (909 aa)
	PV08_07056	Fungal_trans domain-containing protein. (859 aa)
	PV08_01845	Uncharacterized protein. (715 aa)
	PV08_06599	Uncharacterized protein. (431 aa)
	PV08_08930	TAF domain-containing protein. (450 aa)
	PV08_08880	Uncharacterized protein. (1112 aa)
	PV08_01173	Uncharacterized protein. (851 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_01053	Fungal_trans domain-containing protein. (308 aa)
	PV08_00550	Uncharacterized protein. (621 aa)
	PV08_00355	Uncharacterized protein. (433 aa)
	PV08_00613	Uncharacterized protein. (529 aa)
	PV08_00518	RPOL4c domain-containing protein. (152 aa)
	PV08_09353	TAFII28 domain-containing protein. (373 aa)
	PV08_00428	RTR1-type domain-containing protein. (248 aa)
	PV08_00413	Uncharacterized protein. (960 aa)
	PV08_00012	Fungal_trans domain-containing protein. (702 aa)
	PV08_00373	TFIIB-type domain-containing protein. (357 aa)
	PV08_03604	Uncharacterized protein. (713 aa)
	PV08_03673	Uncharacterized protein. (291 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_02892	Uncharacterized protein. (685 aa)
	PV08_11473	Ada_Zn_binding domain-containing protein. (258 aa)
	PV08_11448	Fungal_trans domain-containing protein. (585 aa)
	PV08_11054	Fungal_trans domain-containing protein. (804 aa)
	PV08_04085	Uncharacterized protein. (368 aa)
	PV08_03843	Uncharacterized protein. (217 aa)
	PV08_03963	Uncharacterized protein. (799 aa)
	PV08_06475	BTB domain-containing protein. (972 aa)
	PV08_06284	HTH TFE/IIEalpha-type domain-containing protein. (514 aa)
	PV08_05439	Fungal_trans domain-containing protein. (935 aa)
	PV08_07912	Uncharacterized protein. (830 aa)
	PV08_07703	Uncharacterized protein. (899 aa)
	PV08_11847	C2H2-type domain-containing protein. (565 aa)
	PV08_11625	TATA-box-binding protein. (306 aa)
	PV08_10230	Uncharacterized protein. (895 aa)
	PV08_09743	Uncharacterized protein. (934 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_06937	Uncharacterized protein. (726 aa)
	PV08_07295	Uncharacterized protein. (684 aa)
	PV08_06412	Uncharacterized protein. (727 aa)
	PV08_06432	TFIIE beta domain-containing protein. (231 aa)
	PV08_03834	Uncharacterized protein. (298 aa)
	PV08_04740	Fungal_trans domain-containing protein. (727 aa)
	PV08_04806	Uncharacterized protein. (633 aa)
	PV08_03100	Uncharacterized protein. (830 aa)
	PV08_03341	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
	PV08_00018	Uncharacterized protein. (714 aa)
	PV08_00225	Acyl_transf_3 domain-containing protein. (372 aa)
	PV08_00431	Uncharacterized protein. (957 aa)
	PV08_00761	Uncharacterized protein. (357 aa)
	PV08_00941	Uncharacterized protein. (301 aa)
	PV08_01243	Uncharacterized protein. (92 aa)
	PV08_01986	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (113 aa)
	PV08_12096	Uncharacterized protein. (574 aa)
	PV08_11319	Uncharacterized protein; Belongs to the cyclin family. (506 aa)
	PV08_10291	TAF8_C domain-containing protein. (309 aa)
	PV08_09225	Uncharacterized protein. (1110 aa)
	PV08_09970	Fungal_trans domain-containing protein. (730 aa)
	PV08_08139	Uncharacterized protein. (384 aa)
	PV08_08264	Uncharacterized protein. (435 aa)
	PV08_07582	Uncharacterized protein. (481 aa)
	PV08_07744	Fungal_trans domain-containing protein. (788 aa)
	PV08_05721	Uncharacterized protein. (773 aa)
	PV08_06012	CID domain-containing protein. (478 aa)
	PV08_06128	Uncharacterized protein. (851 aa)
	PV08_06557	Uncharacterized protein. (490 aa)
	PV08_04519	Uncharacterized protein. (367 aa)
	PV08_04967	Uncharacterized protein. (558 aa)
	PV08_02460	Uncharacterized protein. (768 aa)
	PV08_03302	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
	PV08_03631	RNA polymerase II subunit A domain phosphatase ssu72. (304 aa)
	PV08_03707	Fungal_trans domain-containing protein. (645 aa)
	PV08_00432	Uncharacterized protein. (717 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_00742	Uncharacterized protein. (688 aa)
	PV08_01092	Uncharacterized protein. (587 aa)
	PV08_01340	RNA_pol_L_2 domain-containing protein. (243 aa)
	PV08_01531	DUF4211 domain-containing protein. (731 aa)
	PV08_01606	Uncharacterized protein. (825 aa)
	PV08_01877	C2H2-type domain-containing protein. (907 aa)
	PV08_01987	Uncharacterized protein. (343 aa)
	PV08_11994	Fungal_trans domain-containing protein. (869 aa)
	PV08_11704	Isochorismatase domain-containing protein. (195 aa)
	PV08_11210	Uncharacterized protein. (360 aa)
	PV08_11146	Serine/threonine-protein kinase bur1. (655 aa)
	PV08_11181	Uncharacterized protein. (422 aa)
	PV08_11604	Uncharacterized protein. (715 aa)
	PV08_10349	Uncharacterized protein. (710 aa)
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_09062	RPOLD domain-containing protein. (334 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_05856	Fungal_trans domain-containing protein. (657 aa)
	PV08_09911	Uncharacterized protein. (271 aa)
	PV08_07965	Uncharacterized protein. (700 aa)
	PV08_09772	Fungal_trans domain-containing protein. (668 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_08362	Fungal_trans domain-containing protein. (685 aa)
	PV08_08834	C2H2-type domain-containing protein. (868 aa)
	PV08_08909	Uncharacterized protein. (456 aa)
	PV08_08841	CID domain-containing protein. (646 aa)
	PV08_06605	Uncharacterized protein. (472 aa)
	PV08_06936	Lactamase_B domain-containing protein. (349 aa)
	PV08_07242	Uncharacterized protein. (704 aa)
	PV08_07244	Uncharacterized protein. (707 aa)
	PV08_07299	Uncharacterized protein. (210 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00012	PV08_02460	A0A0D2BLJ6	A0A0D1ZZM4	Fungal_trans domain-containing protein.	Uncharacterized protein.	0.422
PV08_00012	PV08_03558	A0A0D2BLJ6	A0A0D2C6Q5	Fungal_trans domain-containing protein.	Uncharacterized protein.	0.426
PV08_00012	PV08_08930	A0A0D2BLJ6	A0A0D2BR70	Fungal_trans domain-containing protein.	TAF domain-containing protein.	0.429
PV08_00012	PV08_09911	A0A0D2BLJ6	A0A0D2B147	Fungal_trans domain-containing protein.	Uncharacterized protein.	0.415
PV08_00012	PV08_11625	A0A0D2BLJ6	A0A0D1Y6Z8	Fungal_trans domain-containing protein.	TATA-box-binding protein.	0.455
PV08_00018	PV08_02460	A0A0D1YVZ9	A0A0D1ZZM4	Uncharacterized protein.	Uncharacterized protein.	0.422
PV08_00018	PV08_03558	A0A0D1YVZ9	A0A0D2C6Q5	Uncharacterized protein.	Uncharacterized protein.	0.426
PV08_00018	PV08_08930	A0A0D1YVZ9	A0A0D2BR70	Uncharacterized protein.	TAF domain-containing protein.	0.429
PV08_00018	PV08_09911	A0A0D1YVZ9	A0A0D2B147	Uncharacterized protein.	Uncharacterized protein.	0.415
PV08_00018	PV08_11625	A0A0D1YVZ9	A0A0D1Y6Z8	Uncharacterized protein.	TATA-box-binding protein.	0.455
PV08_00021	PV08_02460	A0A0D2C7B6	A0A0D1ZZM4	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.422
PV08_00021	PV08_03558	A0A0D2C7B6	A0A0D2C6Q5	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.426
PV08_00021	PV08_08930	A0A0D2C7B6	A0A0D2BR70	Lactamase_B domain-containing protein.	TAF domain-containing protein.	0.429
PV08_00021	PV08_09911	A0A0D2C7B6	A0A0D2B147	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.415
PV08_00021	PV08_11625	A0A0D2C7B6	A0A0D1Y6Z8	Lactamase_B domain-containing protein.	TATA-box-binding protein.	0.455
PV08_00225	PV08_00373	A0A0D1YWH6	A0A0D2BLG9	Acyl_transf_3 domain-containing protein.	TFIIB-type domain-containing protein.	0.926
PV08_00225	PV08_00518	A0A0D1YWH6	A0A0D2BLX8	Acyl_transf_3 domain-containing protein.	RPOL4c domain-containing protein.	0.856
PV08_00225	PV08_00612	A0A0D1YWH6	A0A0D2A5L2	Acyl_transf_3 domain-containing protein.	S1 domain-containing protein.	0.840
PV08_00225	PV08_00613	A0A0D1YWH6	A0A0D2BMA0	Acyl_transf_3 domain-containing protein.	Uncharacterized protein.	0.772
PV08_00225	PV08_00705	A0A0D1YWH6	A0A0D2BNM3	Acyl_transf_3 domain-containing protein.	Uncharacterized protein.	0.837