28 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_01074	Uncharacterized protein. (478 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_00668	RPOLD domain-containing protein. (373 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_06475	BTB domain-containing protein. (972 aa)
	PV08_05815	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1213 aa)
	PV08_05618	Ubiquitin-60S ribosomal protein L40. (151 aa)
	PV08_07247	RRN7-type domain-containing protein. (628 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_11625	TATA-box-binding protein. (306 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_10612	Uncharacterized protein. (1199 aa)
	PV08_10959	Uncharacterized protein. (441 aa)
	PV08_08868	Uncharacterized protein. (692 aa)
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_11607	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1739 aa)
	PV08_10214	Histone H2B; Belongs to the histone H2B family. (141 aa)
	PV08_10505	SprT-like domain-containing protein. (806 aa)
	PV08_10773	Uncharacterized protein. (1582 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00060	PV08_00668	A0A0D2BKM9	A0A0D2BMD8	DNA repair helicase rad15.	RPOLD domain-containing protein.	0.887
PV08_00060	PV08_00705	A0A0D2BKM9	A0A0D2BNM3	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_01525	A0A0D2BKM9	A0A0D1Z066	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02372	A0A0D2BKM9	A0A0D2BHK3	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02977	A0A0D2BKM9	A0A0D2BI97	DNA repair helicase rad15.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
PV08_00060	PV08_03909	A0A0D2BKM9	A0A0D2BDL9	DNA repair helicase rad15.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.992
PV08_00060	PV08_05815	A0A0D2BKM9	A0A0D2BAY4	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.880
PV08_00060	PV08_06475	A0A0D2BKM9	A0A0D2BBN4	DNA repair helicase rad15.	BTB domain-containing protein.	0.937
PV08_00060	PV08_06873	A0A0D2BKM9	A0A0D1ZMP8	DNA repair helicase rad15.	BSD domain-containing protein.	0.999
PV08_00060	PV08_08398	A0A0D2BKM9	A0A0D1YDS8	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_09080	A0A0D2BKM9	A0A0D2AYL3	DNA repair helicase rad15.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.967
PV08_00060	PV08_09592	A0A0D2BKM9	A0A0D2B0T5	DNA repair helicase rad15.	RING-type domain-containing protein.	0.999
PV08_00060	PV08_09645	A0A0D2BKM9	A0A0D2B079	DNA repair helicase rad15.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.991
PV08_00060	PV08_09898	A0A0D2BKM9	A0A0D2B1Z3	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_10505	A0A0D2BKM9	A0A0D2AXL8	DNA repair helicase rad15.	SprT-like domain-containing protein.	0.623
PV08_00060	PV08_10537	A0A0D2BKM9	A0A0D1ZE00	DNA repair helicase rad15.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
PV08_00060	PV08_10773	A0A0D2BKM9	A0A0D2AXR1	DNA repair helicase rad15.	Uncharacterized protein.	0.447
PV08_00060	PV08_10959	A0A0D2BKM9	A0A0D1ZF82	DNA repair helicase rad15.	Uncharacterized protein.	0.691
PV08_00060	PV08_11001	A0A0D2BKM9	A0A0D2BK91	DNA repair helicase rad15.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.969
PV08_00060	PV08_11607	A0A0D2BKM9	A0A0D2AV95	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.733