25 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_00121	Small nuclear ribonucleoprotein G. (80 aa)
	PV08_01548	Small nuclear ribonucleoprotein Sm D3. (150 aa)
	PV08_03538	Uncharacterized protein. (847 aa)
	PV08_03406	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (611 aa)
	PV08_05739	WD_REPEATS_REGION domain-containing protein. (671 aa)
	PV08_00244	DUF3453 domain-containing protein. (761 aa)
	PV08_02631	RRM domain-containing protein. (204 aa)
	PV08_11170	Suf domain-containing protein. (1026 aa)
	PV08_08876	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
	PV08_08841	CID domain-containing protein. (646 aa)
	PV08_09098	Fip1 domain-containing protein. (353 aa)
	PV08_10616	Uncharacterized protein. (299 aa)
	PV08_09144	Uncharacterized protein. (286 aa)
	PV08_05806	RRM domain-containing protein. (293 aa)
	PV08_03789	Cleavage and polyadenylation specificity factor subunit 2. (942 aa)
	PV08_03996	Uncharacterized protein. (348 aa)
	PV08_04492	Uncharacterized protein. (90 aa)
	PV08_01550	Uncharacterized protein. (438 aa)
	PV08_09371	Uncharacterized protein. (606 aa)
	PV08_07627	Nuclear cap-binding protein subunit 2. (180 aa)
	PV08_04228	CPSF_A domain-containing protein. (1359 aa)
	PV08_04493	Sm domain-containing protein. (92 aa)
	PV08_00657	Uncharacterized protein. (245 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (503 aa)
	PV08_11207	Uncharacterized protein. (842 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	PV08_00244	A0A0D2A8Z3	A0A0D2BM47	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	DUF3453 domain-containing protein.	0.816
CLP1	PV08_00657	A0A0D2A8Z3	A0A0D2A5P2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.941
CLP1	PV08_02631	A0A0D2A8Z3	A0A0D2BH74	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.677
CLP1	PV08_03406	A0A0D2A8Z3	A0A0D2C6C6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.877
CLP1	PV08_03538	A0A0D2A8Z3	A0A0D2C6N3	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.935
CLP1	PV08_03789	A0A0D2A8Z3	A0A0D1YNF0	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Cleavage and polyadenylation specificity factor subunit 2.	0.925
CLP1	PV08_03996	A0A0D2A8Z3	A0A0D1YNV2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.786
CLP1	PV08_04228	A0A0D2A8Z3	A0A0D1ZWJ2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	CPSF_A domain-containing protein.	0.886
CLP1	PV08_05739	A0A0D2A8Z3	A0A0D2BWM5	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	WD_REPEATS_REGION domain-containing protein.	0.783
CLP1	PV08_05806	A0A0D2A8Z3	A0A0D1YL28	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.990
CLP1	PV08_08841	A0A0D2A8Z3	A0A0D2B4M9	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	CID domain-containing protein.	0.999
CLP1	PV08_09098	A0A0D2A8Z3	A0A0D2AZD3	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Fip1 domain-containing protein.	0.946
CLP1	PV08_09144	A0A0D2A8Z3	A0A0D1YA92	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.858
CLP1	PV08_09371	A0A0D2A8Z3	A0A0D1ZGK1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.896
CLP1	PV08_11170	A0A0D2A8Z3	A0A0D2BFR5	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Suf domain-containing protein.	0.952
CLP1	PV08_11207	A0A0D2A8Z3	A0A0D2AUR0	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.771
PV08_00121	PV08_00244	A0A0D2C7N2	A0A0D2BM47	Small nuclear ribonucleoprotein G.	DUF3453 domain-containing protein.	0.847
PV08_00121	PV08_01548	A0A0D2C7N2	A0A0D2CBT6	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3.	0.994
PV08_00121	PV08_01550	A0A0D2C7N2	A0A0D1Z090	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.993
PV08_00121	PV08_03538	A0A0D2C7N2	A0A0D2C6N3	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.612