29 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_08139	Uncharacterized protein. (384 aa)
	PV08_04400	CFEM domain-containing protein. (275 aa)
	PV08_07353	mRNA cap 0 methyltransferase domain-containing protein. (594 aa)
	PV08_00705	Uncharacterized protein. (152 aa)
	PV08_00613	Uncharacterized protein. (529 aa)
	PV08_00518	RPOL4c domain-containing protein. (152 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_11001	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (86 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_02581	Methyltransf_25 domain-containing protein. (295 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_07242	Uncharacterized protein. (704 aa)
	PV08_09898	Uncharacterized protein. (238 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_09062	RPOLD domain-containing protein. (334 aa)
	PV08_09080	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	PV08_01340	RNA_pol_L_2 domain-containing protein. (243 aa)
	PV08_00612	S1 domain-containing protein. (167 aa)
	PV08_03302	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1772 aa)
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_09699	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1089 aa)
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_03341	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1294 aa)
	PV08_07330	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (422 aa)
	PV08_08398	Uncharacterized protein. (74 aa)
	PV08_10706	TYR_PHOSPHATASE_2 domain-containing protein. (622 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00060	PV08_00518	A0A0D2BKM9	A0A0D2BLX8	DNA repair helicase rad15.	RPOL4c domain-containing protein.	0.973
PV08_00060	PV08_00612	A0A0D2BKM9	A0A0D2A5L2	DNA repair helicase rad15.	S1 domain-containing protein.	0.966
PV08_00060	PV08_00613	A0A0D2BKM9	A0A0D2BMA0	DNA repair helicase rad15.	Uncharacterized protein.	0.944
PV08_00060	PV08_00705	A0A0D2BKM9	A0A0D2BNM3	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_01340	A0A0D2BKM9	A0A0D2A7J8	DNA repair helicase rad15.	RNA_pol_L_2 domain-containing protein.	0.965
PV08_00060	PV08_01525	A0A0D2BKM9	A0A0D1Z066	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02372	A0A0D2BKM9	A0A0D2BHK3	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02977	A0A0D2BKM9	A0A0D2BI97	DNA repair helicase rad15.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
PV08_00060	PV08_03302	A0A0D2BKM9	A0A0D2A281	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
PV08_00060	PV08_03341	A0A0D2BKM9	A0A0D1YUW7	DNA repair helicase rad15.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.971
PV08_00060	PV08_03909	A0A0D2BKM9	A0A0D2BDL9	DNA repair helicase rad15.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.992
PV08_00060	PV08_06873	A0A0D2BKM9	A0A0D1ZMP8	DNA repair helicase rad15.	BSD domain-containing protein.	0.999
PV08_00060	PV08_07242	A0A0D2BKM9	A0A0D2B6H1	DNA repair helicase rad15.	Uncharacterized protein.	0.971
PV08_00060	PV08_08139	A0A0D2BKM9	A0A0D1ZJF2	DNA repair helicase rad15.	Uncharacterized protein.	0.969
PV08_00060	PV08_08398	A0A0D2BKM9	A0A0D1YDS8	DNA repair helicase rad15.	Uncharacterized protein.	0.970
PV08_00060	PV08_09062	A0A0D2BKM9	A0A0D2AZ98	DNA repair helicase rad15.	RPOLD domain-containing protein.	0.972
PV08_00060	PV08_09080	A0A0D2BKM9	A0A0D2AYL3	DNA repair helicase rad15.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.967
PV08_00060	PV08_09592	A0A0D2BKM9	A0A0D2B0T5	DNA repair helicase rad15.	RING-type domain-containing protein.	0.999
PV08_00060	PV08_09645	A0A0D2BKM9	A0A0D2B079	DNA repair helicase rad15.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.991
PV08_00060	PV08_09898	A0A0D2BKM9	A0A0D2B1Z3	DNA repair helicase rad15.	Uncharacterized protein.	0.970