65 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_05948	Uncharacterized protein. (232 aa)
	PV08_11051	Uncharacterized protein. (276 aa)
	PV08_09698	Uncharacterized protein. (340 aa)
	PV08_09718	Uncharacterized protein. (306 aa)
	PV08_08018	Uncharacterized protein. (288 aa)
	PV08_08123	Uncharacterized protein. (310 aa)
	PV08_05366	Uncharacterized protein. (253 aa)
	PV08_05371	Uncharacterized protein. (254 aa)
	PV08_06097	Uncharacterized protein. (365 aa)
	PV08_04157	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (294 aa)
	PV08_04182	Uncharacterized protein. (367 aa)
	PV08_02282	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (281 aa)
	PV08_03428	Uncharacterized protein. (324 aa)
	PV08_03711	Uncharacterized protein. (316 aa)
	PV08_01455	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (293 aa)
	PV08_02161	Uncharacterized protein. (253 aa)
	PV08_10712	Uncharacterized protein. (248 aa)
	PV08_09714	Uncharacterized protein. (324 aa)
	PV08_08444	Uncharacterized protein. (317 aa)
	PV08_08928	Uncharacterized protein. (283 aa)
	PV08_07702	Uncharacterized protein. (357 aa)
	PV08_05187	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (371 aa)
	PV08_05767	Uncharacterized protein. (258 aa)
	PV08_05917	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (292 aa)
	PV08_06148	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (285 aa)
	PV08_06213	Uncharacterized protein. (274 aa)
	PV08_01167	Uncharacterized protein. (394 aa)
	PV08_11888	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (272 aa)
	PV08_11280	Uncharacterized protein. (347 aa)
	PV08_11791	Uncharacterized protein. (318 aa)
	PV08_11452	Uncharacterized protein. (232 aa)
	PV08_11487	Uncharacterized protein. (331 aa)
	PV08_09494	Uncharacterized protein. (190 aa)
	PV08_09511	Uncharacterized protein. (304 aa)
	PV08_07949	Uncharacterized protein. (266 aa)
	PV08_08508	Uncharacterized protein. (273 aa)
	PV08_08538	Uncharacterized protein. (338 aa)
	PV08_06789	Uncharacterized protein. (321 aa)
	PV08_07394	Uncharacterized protein. (286 aa)
	PV08_05203	Uncharacterized protein. (313 aa)
	PV08_05233	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (237 aa)
	PV08_05646	Uncharacterized protein. (265 aa)
	PV08_05818	Uncharacterized protein. (285 aa)
	PV08_11720	Uncharacterized protein. (225 aa)
	PV08_04614	Uncharacterized protein. (262 aa)
	PV08_04880	Uncharacterized protein. (221 aa)
	PV08_10138	Uncharacterized protein. (311 aa)
	PV08_03537	Uncharacterized protein. (331 aa)
	PV08_09551	Uncharacterized protein. (352 aa)
	PV08_00853	Uncharacterized protein. (230 aa)
	PV08_00885	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (347 aa)
	PV08_08091	Uncharacterized protein. (334 aa)
	PV08_01431	Uncharacterized protein. (257 aa)
	PV08_01110	Uncharacterized protein. (233 aa)
	PV08_08915	Uncharacterized protein. (302 aa)
	PV08_06350	Uncharacterized protein. (152 aa)
	PV08_04490	Uncharacterized protein. (288 aa)
	PV08_02527	Uncharacterized protein. (291 aa)
	PV08_02707	Uncharacterized protein. (72 aa)
	PV08_00338	NodB homology domain-containing protein. (628 aa)
	PV08_00379	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (299 aa)
	PV08_00609	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
	PV08_01004	Uncharacterized protein. (264 aa)
	PV08_01194	Uncharacterized protein. (265 aa)
	PV08_02249	Uncharacterized protein. (249 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00379	PV08_05233	A0A0D2C8A5	A0A0D2B8D6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.577
PV08_00379	PV08_05917	A0A0D2C8A5	A0A0D1ZST2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV08_00379	PV08_06148	A0A0D2C8A5	A0A0D1ZTJ4	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.571
PV08_00885	PV08_08091	A0A0D2BP59	A0A0D2BP84	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.526
PV08_00885	PV08_09551	A0A0D2BP59	A0A0D2BM56	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.498
PV08_01110	PV08_04157	A0A0D2BPW3	A0A0D1YP80	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.681
PV08_01167	PV08_06789	A0A0D2A751	A0A0D2B569	Uncharacterized protein.	Uncharacterized protein.	0.439
PV08_01455	PV08_06789	A0A0D1YZY1	A0A0D2B569	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.430
PV08_04157	PV08_01110	A0A0D1YP80	A0A0D2BPW3	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.681
PV08_04157	PV08_06789	A0A0D1YP80	A0A0D2B569	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.599
PV08_04157	PV08_07949	A0A0D1YP80	A0A0D2B1F8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.602
PV08_05233	PV08_00379	A0A0D2B8D6	A0A0D2C8A5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.577
PV08_05233	PV08_06789	A0A0D2B8D6	A0A0D2B569	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.427
PV08_05917	PV08_00379	A0A0D1ZST2	A0A0D2C8A5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV08_06148	PV08_00379	A0A0D1ZTJ4	A0A0D2C8A5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.571
PV08_06789	PV08_01167	A0A0D2B569	A0A0D2A751	Uncharacterized protein.	Uncharacterized protein.	0.439
PV08_06789	PV08_01455	A0A0D2B569	A0A0D1YZY1	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.430
PV08_06789	PV08_04157	A0A0D2B569	A0A0D1YP80	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.599
PV08_06789	PV08_05233	A0A0D2B569	A0A0D2B8D6	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.427
PV08_06789	PV08_08928	A0A0D2B569	A0A0D1ZLM4	Uncharacterized protein.	Uncharacterized protein.	0.448