(16 nodes) cheY-homologous receiver domain network (Exophiala spinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_11322	Uncharacterized protein. (1291 aa)
	PV08_10590	Uncharacterized protein. (1410 aa)
	PV08_10336	Response regulatory domain-containing protein. (621 aa)
	PV08_09413	Uncharacterized protein. (688 aa)
	PV08_11458	Uncharacterized protein. (2399 aa)
	PV08_10694	Uncharacterized protein. (986 aa)
	PV08_03650	Uncharacterized protein. (1157 aa)
	PV08_05079	Uncharacterized protein. (899 aa)
	PV08_07316	Uncharacterized protein. (1404 aa)
	PV08_04132	Response regulatory domain-containing protein. (858 aa)
	PV08_03652	Uncharacterized protein. (1330 aa)
	PV08_11860	Uncharacterized protein. (631 aa)
	PV08_11400	Uncharacterized protein. (1880 aa)
	PV08_03408	Uncharacterized protein. (1282 aa)
	PV08_01515	Uncharacterized protein. (1465 aa)
	PV08_01520	Uncharacterized protein. (1982 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_01515	PV08_03650	A0A0D1Z053	A0A0D2BL94	Uncharacterized protein.	Uncharacterized protein.	0.484
PV08_03650	PV08_01515	A0A0D2BL94	A0A0D1Z053	Uncharacterized protein.	Uncharacterized protein.	0.484
PV08_03650	PV08_04132	A0A0D2BL94	A0A0D1ZW80	Uncharacterized protein.	Response regulatory domain-containing protein.	0.735
PV08_03650	PV08_10336	A0A0D2BL94	A0A0D1ZDJ9	Uncharacterized protein.	Response regulatory domain-containing protein.	0.623
PV08_04132	PV08_03650	A0A0D1ZW80	A0A0D2BL94	Response regulatory domain-containing protein.	Uncharacterized protein.	0.735
PV08_04132	PV08_10336	A0A0D1ZW80	A0A0D1ZDJ9	Response regulatory domain-containing protein.	Response regulatory domain-containing protein.	0.687
PV08_10336	PV08_03650	A0A0D1ZDJ9	A0A0D2BL94	Response regulatory domain-containing protein.	Uncharacterized protein.	0.623
PV08_10336	PV08_04132	A0A0D1ZDJ9	A0A0D1ZW80	Response regulatory domain-containing protein.	Response regulatory domain-containing protein.	0.687