STRINGSTRING
PV08_04406 PV08_04406 PV08_06516 PV08_06516 PV08_03936 PV08_03936 PV08_04037 PV08_04037 PV08_04238 PV08_04238 PV08_04388 PV08_04388 PV08_04666 PV08_04666 PV08_00617 PV08_00617 PV08_00622 PV08_00622 PV08_00837 PV08_00837 PV08_00857 PV08_00857 PV08_01405 PV08_01405 PV08_02132 PV08_02132 PV08_11378 PV08_11378 PV08_11579 PV08_11579 PV08_10563 PV08_10563 PV08_10475 PV08_10475 PV08_10950 PV08_10950 PV08_11002 PV08_11002 PV08_09459 PV08_09459 PV08_09506 PV08_09506 PV08_09817 PV08_09817 PV08_08180 PV08_08180 PV08_08142 PV08_08142 PV08_08591 PV08_08591 PV08_08573 PV08_08573 PV08_08884 PV08_08884 PV08_08934 PV08_08934 PV08_08733 PV08_08733 PV08_06744 PV08_06744 PV08_06879 PV08_06879 PV08_07454 PV08_07454 PV08_07785 PV08_07785 PV08_07650 PV08_07650 PV08_06111 PV08_06111 PV08_04284 PV08_04284 PV08_03960 PV08_03960 PV08_03975 PV08_03975 PV08_04110 PV08_04110 PV08_11970 PV08_11970 PV08_04396 PV08_04396 PV08_02481 PV08_02481 PV08_02558 PV08_02558 PV08_03338 PV08_03338 PV08_03466 PV08_03466 PV08_03139 PV08_03139 PV08_10941 PV08_10941 PV08_03280 PV08_03280 PV08_09460 PV08_09460 PV08_00538 PV08_00538 PV08_09841 PV08_09841 TIF6 TIF6 PV08_08176 PV08_08176 PV08_08186 PV08_08186 PV08_08236 PV08_08236 PV08_01617 PV08_01617 PV08_08612 PV08_08612 PV08_08617 PV08_08617 PV08_08732 PV08_08732 PV08_06755 PV08_06755 PV08_01815 PV08_01815 NAT10 NAT10 PV08_07318 PV08_07318 PV08_07766 PV08_07766 PV08_04034 PV08_04034 PV08_04104 PV08_04104 PV08_04914 PV08_04914 PV08_05034 PV08_05034 PV08_01819 PV08_01819 PV08_11147 PV08_11147 PV08_11379 PV08_11379 PV08_11385 PV08_11385 PV08_10636 PV08_10636 PV08_09089 PV08_09089 PV08_07535 PV08_07535 PV08_07823 PV08_07823 PV08_07878 PV08_07878 PV08_04272 PV08_04272 PV08_03155 PV08_03155 PV08_01126 PV08_01126 PV08_01156 PV08_01156 PV08_01268 PV08_01268 PV08_01826 PV08_01826 PV08_01901 PV08_01901 PV08_02131 PV08_02131 PV08_11743 PV08_11743 PV08_09170 PV08_09170 PV08_09266 PV08_09266 PV08_08575 PV08_08575 PV08_06743 PV08_06743 PV08_06893 PV08_06893 PV08_07531 PV08_07531 PV08_05757 PV08_05757 PV08_06133 PV08_06133
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV08_04406GAR domain-containing protein. (1071 aa)
PV08_06516Uncharacterized protein. (245 aa)
PV08_03936CP-type G domain-containing protein. (663 aa)
PV08_0403718S rRNA biogenesis protein RCL1. (406 aa)
PV08_04238WD_REPEATS_REGION domain-containing protein. (960 aa)
PV08_04388Uncharacterized protein. (1030 aa)
PV08_04666WD_REPEATS_REGION domain-containing protein. (963 aa)
PV08_00617Ribosomal RNA small subunit methyltransferase NEP1. (256 aa)
PV08_00622Uncharacterized protein. (710 aa)
PV08_00837Exonuclease domain-containing protein. (354 aa)
PV08_00857Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (659 aa)
PV08_01405WD_REPEATS_REGION domain-containing protein. (990 aa)
PV08_02132Tr-type G domain-containing protein. (1082 aa)
PV08_11378Zn(2)-C6 fungal-type domain-containing protein. (745 aa)
PV08_11579Exonuclease domain-containing protein. (258 aa)
PV08_10563GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (217 aa)
PV08_10475Uncharacterized protein. (684 aa)
PV08_10950H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (205 aa)
PV08_11002WD_REPEATS_REGION domain-containing protein. (984 aa)
PV08_09459Nop domain-containing protein. (517 aa)
PV08_09506Uncharacterized protein. (721 aa)
PV08_09817Nucleolar protein 58. (632 aa)
PV08_08180Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (371 aa)
PV08_08142Uncharacterized protein. (303 aa)
PV08_08591U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (743 aa)
PV08_08573Kri1_C domain-containing protein. (601 aa)
PV08_08884Uncharacterized protein. (188 aa)
PV08_089345'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1398 aa)
PV08_0873320S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (442 aa)
PV08_06744Utp12 domain-containing protein. (934 aa)
PV08_06879Protein kinase domain-containing protein. (294 aa)
PV08_07454C2H2-type domain-containing protein. (520 aa)
PV08_07785CP-type G domain-containing protein. (549 aa)
PV08_07650Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (591 aa)
PV08_06111Bms1-type G domain-containing protein. (1179 aa)
PV08_04284Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
PV08_03960Uncharacterized protein. (379 aa)
PV08_03975Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (334 aa)
PV08_04110Fcf2 domain-containing protein. (228 aa)
PV08_11970Uncharacterized protein. (790 aa)
PV08_04396Uncharacterized protein. (126 aa)
PV08_02481WD_REPEATS_REGION domain-containing protein. (864 aa)
PV08_02558Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (356 aa)
PV08_03338Uncharacterized protein. (369 aa)
PV08_03466Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (388 aa)
PV08_03139rRNA 2'-O-methyltransferase fibrillarin. (324 aa)
PV08_10941Uncharacterized protein. (388 aa)
PV08_03280BP28CT domain-containing protein. (1827 aa)
PV08_09460Uncharacterized protein. (233 aa)
PV08_00538Exonuclease domain-containing protein. (790 aa)
PV08_09841RNase III domain-containing protein. (313 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (248 aa)
PV08_08176Zn(2)-C6 fungal-type domain-containing protein. (738 aa)
PV08_08186Uncharacterized protein. (133 aa)
PV08_08236Uncharacterized protein. (739 aa)
PV08_0161760S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (519 aa)
PV08_08612Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (274 aa)
PV08_08617Brix domain-containing protein. (296 aa)
PV08_08732H/ACA ribonucleoprotein complex subunit 3. (64 aa)
PV08_06755Importin N-terminal domain-containing protein. (1072 aa)
PV08_01815RIO domain-containing protein. (382 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1129 aa)
PV08_07318WD_REPEATS_REGION domain-containing protein. (603 aa)
PV08_07766U3 small nucleolar RNA-associated protein 22. (1121 aa)
PV08_04034Bromo domain-containing protein. (352 aa)
PV08_04104Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (186 aa)
PV08_04914PINc domain-containing protein. (194 aa)
PV08_05034Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (583 aa)
PV08_01819Spindle pole body component. (761 aa)
PV08_11147Uncharacterized protein. (504 aa)
PV08_11379Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (437 aa)
PV08_113855'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1038 aa)
PV08_10636Uncharacterized protein. (403 aa)
PV08_09089Ribonuclease P protein subunit. (289 aa)
PV08_07535Exonuclease domain-containing protein. (648 aa)
PV08_07823zf-C2H2_2 domain-containing protein. (311 aa)
PV08_07878WD_REPEATS_REGION domain-containing protein. (533 aa)
PV08_04272TAP-C domain-containing protein. (430 aa)
PV08_03155Uncharacterized protein. (296 aa)
PV08_01126Uncharacterized protein. (1089 aa)
PV08_01156RAI1 domain-containing protein. (394 aa)
PV08_01268Centromere/microtubule-binding protein cbf5. (504 aa)
PV08_01826Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (207 aa)
PV08_01901S4 RNA-binding domain-containing protein. (188 aa)
PV08_02131DUF4604 domain-containing protein. (187 aa)
PV08_11743Zn(2)-C6 fungal-type domain-containing protein. (710 aa)
PV08_09170Glyco_hydro_cc domain-containing protein. (736 aa)
PV08_09266tRNA pseudouridine(55) synthase. (424 aa)
PV08_08575Uncharacterized protein. (459 aa)
PV08_06743Uncharacterized protein. (987 aa)
PV08_06893Uncharacterized protein. (938 aa)
PV08_07531Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (266 aa)
PV08_05757Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4840 aa)
PV08_06133WD_REPEATS_REGION domain-containing protein. (1505 aa)
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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