63 items (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV08_10537	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	PV08_01625	CULLIN_2 domain-containing protein; Belongs to the cullin family. (896 aa)
	PV08_01600	DNA polymerase. (1107 aa)
	PV08_01525	Uncharacterized protein. (505 aa)
	PV08_03721	Uncharacterized protein. (265 aa)
	PV08_04655	Uncharacterized protein. (530 aa)
	PV08_07500	Uncharacterized protein. (1046 aa)
	PV08_07325	DNA ligase. (866 aa)
	PV08_07983	Uncharacterized protein. (151 aa)
	PV08_09462	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2235 aa)
	PV08_09008	CCHC-type domain-containing protein. (938 aa)
	PV08_11283	ERCC4 domain-containing protein. (944 aa)
	PV08_02039	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	PV08_01969	CCHC-type domain-containing protein. (393 aa)
	PV08_03568	DNA ligase. (881 aa)
	PV08_02547	AAA domain-containing protein. (407 aa)
	PV08_07544	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (220 aa)
	PV08_01950	DNA repair protein. (360 aa)
	PV08_06790	Replication factor C subunit 1. (1080 aa)
	PV08_01684	AAA domain-containing protein. (1093 aa)
	PV08_02143	Uncharacterized protein. (581 aa)
	PV08_02113	Protein kinase domain-containing protein. (947 aa)
	PV08_10007	Uncharacterized protein. (134 aa)
	PV08_00928	UV excision repair protein Rad23. (839 aa)
	PV08_00287	AAA domain-containing protein. (413 aa)
	PV08_00060	DNA repair helicase rad15. (816 aa)
	PV08_03345	Uncharacterized protein. (1110 aa)
	PV08_03027	Uncharacterized protein. (1047 aa)
	PV08_02977	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (459 aa)
	PV08_02372	Uncharacterized protein. (843 aa)
	PV08_04795	Uncharacterized protein. (510 aa)
	PV08_04780	Uncharacterized protein. (1338 aa)
	PV08_04231	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (536 aa)
	PV08_11884	Amino_oxidase domain-containing protein. (534 aa)
	PV08_04399	Replication factor C subunit 4. (352 aa)
	PV08_03909	CYCLIN domain-containing protein; Belongs to the cyclin family. (376 aa)
	PV08_06286	Zds_C domain-containing protein. (916 aa)
	PV08_05603	Uncharacterized protein. (165 aa)
	PV08_07817	CBFD_NFYB_HMF domain-containing protein. (340 aa)
	PV08_07539	Vezatin domain-containing protein. (586 aa)
	PV08_07239	Uncharacterized protein. (209 aa)
	PV08_06610	DNA_pol_E_B domain-containing protein. (842 aa)
	PV08_08985	HTH myb-type domain-containing protein. (556 aa)
	PV08_08227	Uncharacterized protein. (378 aa)
	PV08_08165	HMG box domain-containing protein. (321 aa)
	PV08_08025	CPSF_A domain-containing protein. (1205 aa)
	PV08_09592	RING-type domain-containing protein. (265 aa)
	PV08_09450	Stn1 domain-containing protein. (344 aa)
	PV08_09645	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (423 aa)
	PV08_09216	Uncharacterized protein. (226 aa)
	PV08_10209	Helicase ATP-binding domain-containing protein. (831 aa)
	PV08_01972	Uncharacterized protein. (275 aa)
	PV08_01626	Uncharacterized protein. (111 aa)
	PV08_00832	Uncharacterized protein. (1194 aa)
	PV08_05002	WD_REPEATS_REGION domain-containing protein. (508 aa)
	PV08_04691	Uncharacterized protein. (1013 aa)
	PV08_03815	RING-box protein 1. (125 aa)
	PV08_06173	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	PV08_05327	Uncharacterized protein. (1032 aa)
	PV08_06873	BSD domain-containing protein. (630 aa)
	PV08_06808	Replication factor C subunit 5. (354 aa)
	PV08_08054	Uncharacterized protein. (308 aa)
	PV08_10246	Uncharacterized protein. (78 aa)

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00060	PV08_00287	A0A0D2BKM9	A0A0D2BL76	DNA repair helicase rad15.	AAA domain-containing protein.	0.670
PV08_00060	PV08_00832	A0A0D2BKM9	A0A0D2A640	DNA repair helicase rad15.	Uncharacterized protein.	0.817
PV08_00060	PV08_00928	A0A0D2BKM9	A0A0D2BN39	DNA repair helicase rad15.	UV excision repair protein Rad23.	0.831
PV08_00060	PV08_01525	A0A0D2BKM9	A0A0D1Z066	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_01600	A0A0D2BKM9	A0A0D1Z0D9	DNA repair helicase rad15.	DNA polymerase.	0.811
PV08_00060	PV08_01625	A0A0D2BKM9	A0A0D1Z0F0	DNA repair helicase rad15.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.748
PV08_00060	PV08_01626	A0A0D2BKM9	A0A0D2A8F9	DNA repair helicase rad15.	Uncharacterized protein.	0.404
PV08_00060	PV08_01684	A0A0D2BKM9	A0A0D2BRS7	DNA repair helicase rad15.	AAA domain-containing protein.	0.771
PV08_00060	PV08_01950	A0A0D2BKM9	A0A0D2BSG4	DNA repair helicase rad15.	DNA repair protein.	0.980
PV08_00060	PV08_01969	A0A0D2BKM9	A0A0D2CD06	DNA repair helicase rad15.	CCHC-type domain-containing protein.	0.404
PV08_00060	PV08_01972	A0A0D2BKM9	A0A0D2A9E5	DNA repair helicase rad15.	Uncharacterized protein.	0.747
PV08_00060	PV08_02113	A0A0D2BKM9	A0A0D2BR90	DNA repair helicase rad15.	Protein kinase domain-containing protein.	0.965
PV08_00060	PV08_02372	A0A0D2BKM9	A0A0D2BHK3	DNA repair helicase rad15.	Uncharacterized protein.	0.999
PV08_00060	PV08_02547	A0A0D2BKM9	A0A0D2C3N9	DNA repair helicase rad15.	AAA domain-containing protein.	0.660
PV08_00060	PV08_02977	A0A0D2BKM9	A0A0D2BI97	DNA repair helicase rad15.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
PV08_00060	PV08_03027	A0A0D2BKM9	A0A0D2BIF8	DNA repair helicase rad15.	Uncharacterized protein.	0.891
PV08_00060	PV08_03345	A0A0D2BKM9	A0A0D2BKH4	DNA repair helicase rad15.	Uncharacterized protein.	0.817
PV08_00060	PV08_03568	A0A0D2BKM9	A0A0D2C6R7	DNA repair helicase rad15.	DNA ligase.	0.756
PV08_00060	PV08_03721	A0A0D2BKM9	A0A0D1YVX7	DNA repair helicase rad15.	Uncharacterized protein.	0.404
PV08_00060	PV08_03815	A0A0D2BKM9	A0A0D1ZV76	DNA repair helicase rad15.	RING-box protein 1.	0.671