(5 nodes) Post-translational protein targeting to membrane, translocation network (Aptenodytes forsteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AS27_07789	Protein transport protein Sec61 subunit gamma. (66 aa)
	AS27_03667	Translocation protein SEC63. (723 aa)
	AS27_15911	Protein transport protein Sec61 subunit beta. (96 aa)
	AS27_03923	Translocation protein SEC62. (388 aa)
	AS27_11709	Protein transport protein Sec61 subunit alpha isoform 1. (475 aa)

Your Current Organism:

Aptenodytes forsteri

NCBI taxonomy Id: 9233
Other names: A. forsteri, emperor penguin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS27_03667	AS27_03923	A0A087QJP3	A0A087R4I8	Translocation protein SEC63.	Translocation protein SEC62.	0.999
AS27_03667	AS27_07789	A0A087QJP3	A0A087QHR6	Translocation protein SEC63.	Protein transport protein Sec61 subunit gamma.	0.996
AS27_03667	AS27_11709	A0A087QJP3	A0A087RC70	Translocation protein SEC63.	Protein transport protein Sec61 subunit alpha isoform 1.	0.997
AS27_03667	AS27_15911	A0A087QJP3	A0A087QWZ6	Translocation protein SEC63.	Protein transport protein Sec61 subunit beta.	0.996
AS27_03923	AS27_03667	A0A087R4I8	A0A087QJP3	Translocation protein SEC62.	Translocation protein SEC63.	0.999
AS27_03923	AS27_07789	A0A087R4I8	A0A087QHR6	Translocation protein SEC62.	Protein transport protein Sec61 subunit gamma.	0.984
AS27_03923	AS27_11709	A0A087R4I8	A0A087RC70	Translocation protein SEC62.	Protein transport protein Sec61 subunit alpha isoform 1.	0.928
AS27_03923	AS27_15911	A0A087R4I8	A0A087QWZ6	Translocation protein SEC62.	Protein transport protein Sec61 subunit beta.	0.948
AS27_07789	AS27_03667	A0A087QHR6	A0A087QJP3	Protein transport protein Sec61 subunit gamma.	Translocation protein SEC63.	0.996
AS27_07789	AS27_03923	A0A087QHR6	A0A087R4I8	Protein transport protein Sec61 subunit gamma.	Translocation protein SEC62.	0.984
AS27_07789	AS27_11709	A0A087QHR6	A0A087RC70	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit alpha isoform 1.	0.987
AS27_07789	AS27_15911	A0A087QHR6	A0A087QWZ6	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit beta.	0.999
AS27_11709	AS27_03667	A0A087RC70	A0A087QJP3	Protein transport protein Sec61 subunit alpha isoform 1.	Translocation protein SEC63.	0.997
AS27_11709	AS27_03923	A0A087RC70	A0A087R4I8	Protein transport protein Sec61 subunit alpha isoform 1.	Translocation protein SEC62.	0.928
AS27_11709	AS27_07789	A0A087RC70	A0A087QHR6	Protein transport protein Sec61 subunit alpha isoform 1.	Protein transport protein Sec61 subunit gamma.	0.987
AS27_11709	AS27_15911	A0A087RC70	A0A087QWZ6	Protein transport protein Sec61 subunit alpha isoform 1.	Protein transport protein Sec61 subunit beta.	0.988
AS27_15911	AS27_03667	A0A087QWZ6	A0A087QJP3	Protein transport protein Sec61 subunit beta.	Translocation protein SEC63.	0.996
AS27_15911	AS27_03923	A0A087QWZ6	A0A087R4I8	Protein transport protein Sec61 subunit beta.	Translocation protein SEC62.	0.948
AS27_15911	AS27_07789	A0A087QWZ6	A0A087QHR6	Protein transport protein Sec61 subunit beta.	Protein transport protein Sec61 subunit gamma.	0.999
AS27_15911	AS27_11709	A0A087QWZ6	A0A087RC70	Protein transport protein Sec61 subunit beta.	Protein transport protein Sec61 subunit alpha isoform 1.	0.988