(14 nodes) ER-Phagosome pathway network (Aptenodytes forsteri)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AS27_07310	CUGBP Elav-like family member 4. (361 aa)
	AS27_07311	CUGBP Elav-like family member 4. (123 aa)
	AS27_03250	Vesicle-associated membrane protein 3. (97 aa)
	AS27_10948	Antigen peptide transporter 2. (248 aa)
	AS27_10949	Antigen peptide transporter 2. (188 aa)
	AS27_00668	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system. (93 aa)
	AS27_02341	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (188 aa)
	AS27_07019	CUGBP Elav-like family member 4. (95 aa)
	AS27_07020	CUGBP Elav-like family member 3. (354 aa)
	AS27_02458	CUGBP Elav-like family member 5. (400 aa)
	AS27_14927	Protein disulfide-isomerase. (425 aa)
	AS27_11709	Protein transport protein Sec61 subunit alpha isoform 1. (475 aa)
	AS27_15236	Protein transport protein Sec61 subunit alpha isoform 2. (478 aa)
	AS27_07797	Protein disulfide-isomerase. (616 aa)

Your Current Organism:

Aptenodytes forsteri

NCBI taxonomy Id: 9233
Other names: A. forsteri, emperor penguin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS27_00668	AS27_03250	A0A087QWE6	A0A087QS40	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Vesicle-associated membrane protein 3.	0.410
AS27_00668	AS27_07797	A0A087QWE6	A0A087QHS4	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Protein disulfide-isomerase.	0.710
AS27_00668	AS27_10948	A0A087QWE6	A0A087QGJ4	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Antigen peptide transporter 2.	0.480
AS27_00668	AS27_10949	A0A087QWE6	A0A087QGJ5	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Antigen peptide transporter 2.	0.480
AS27_00668	AS27_14927	A0A087QWE6	A0A087R478	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Protein disulfide-isomerase.	0.803
AS27_02341	AS27_03250	A0A087QYS0	A0A087QS40	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Vesicle-associated membrane protein 3.	0.969
AS27_03250	AS27_00668	A0A087QS40	A0A087QWE6	Vesicle-associated membrane protein 3.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.410
AS27_03250	AS27_02341	A0A087QS40	A0A087QYS0	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.969
AS27_03250	AS27_07797	A0A087QS40	A0A087QHS4	Vesicle-associated membrane protein 3.	Protein disulfide-isomerase.	0.535
AS27_03250	AS27_14927	A0A087QS40	A0A087R478	Vesicle-associated membrane protein 3.	Protein disulfide-isomerase.	0.536
AS27_07019	AS27_07020	A0A087R1C8	A0A087R1C9	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 3.	0.825
AS27_07019	AS27_07310	A0A087R1C8	A0A087QHU3	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 4.	0.825
AS27_07020	AS27_07019	A0A087R1C9	A0A087R1C8	CUGBP Elav-like family member 3.	CUGBP Elav-like family member 4.	0.825
AS27_07020	AS27_07311	A0A087R1C9	A0A087QHU4	CUGBP Elav-like family member 3.	CUGBP Elav-like family member 4.	0.894
AS27_07310	AS27_07019	A0A087QHU3	A0A087R1C8	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 4.	0.825
AS27_07310	AS27_07311	A0A087QHU3	A0A087QHU4	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 4.	0.909
AS27_07311	AS27_07020	A0A087QHU4	A0A087R1C9	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 3.	0.894
AS27_07311	AS27_07310	A0A087QHU4	A0A087QHU3	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 4.	0.909
AS27_07797	AS27_00668	A0A087QHS4	A0A087QWE6	Protein disulfide-isomerase.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.710
AS27_07797	AS27_03250	A0A087QHS4	A0A087QS40	Protein disulfide-isomerase.	Vesicle-associated membrane protein 3.	0.535