5 items (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEURL1B	E3 ubiquitin-protein ligase NEURL1B. (524 aa)
	RAPSN	43 kDa receptor-associated protein of the synapse. (399 aa)
	AS28_13206	Protein strawberry notch 2. (1146 aa)
	NEURL1	Neuralized-like 1A. (546 aa)
	AS28_02467	Protein EURL. (292 aa)

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS28_02467	NEURL1	A0A093RFS9	A0A093P7M3	Protein EURL.	Neuralized-like 1A.	0.674
AS28_02467	NEURL1B	A0A093RFS9	A0A093NT17	Protein EURL.	E3 ubiquitin-protein ligase NEURL1B.	0.674
AS28_13206	NEURL1	A0A093P5D9	A0A093P7M3	Protein strawberry notch 2.	Neuralized-like 1A.	0.408
AS28_13206	NEURL1B	A0A093P5D9	A0A093NT17	Protein strawberry notch 2.	E3 ubiquitin-protein ligase NEURL1B.	0.408
NEURL1	AS28_02467	A0A093P7M3	A0A093RFS9	Neuralized-like 1A.	Protein EURL.	0.674
NEURL1	AS28_13206	A0A093P7M3	A0A093P5D9	Neuralized-like 1A.	Protein strawberry notch 2.	0.408
NEURL1	RAPSN	A0A093P7M3	A0A093P412	Neuralized-like 1A.	43 kDa receptor-associated protein of the synapse.	0.675
NEURL1B	AS28_02467	A0A093NT17	A0A093RFS9	E3 ubiquitin-protein ligase NEURL1B.	Protein EURL.	0.674
NEURL1B	AS28_13206	A0A093NT17	A0A093P5D9	E3 ubiquitin-protein ligase NEURL1B.	Protein strawberry notch 2.	0.408
NEURL1B	RAPSN	A0A093NT17	A0A093P412	E3 ubiquitin-protein ligase NEURL1B.	43 kDa receptor-associated protein of the synapse.	0.675
RAPSN	NEURL1	A0A093P412	A0A093P7M3	43 kDa receptor-associated protein of the synapse.	Neuralized-like 1A.	0.675
RAPSN	NEURL1B	A0A093P412	A0A093NT17	43 kDa receptor-associated protein of the synapse.	E3 ubiquitin-protein ligase NEURL1B.	0.675